Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1173 ATGCTTTATGGAGATGTTATGCTCGAGTTTAGAAGATTCAGATTTGTTGATTTGTCTTGGAATTATTTAGAAGGCAAAATTCCGGACTATATGGTAAGAAACTCATCTCTTCTTAACAACAACTGCCTCCAAAATGTTTCAAATCAGAGAGGTTTGATAGAATGTTCGTCGTTCTATTCTCAACGGGGGTTGAAGTTTGATGAATTCGGTATATCAAACTCCACGGAAGAAATTACTGCTTTAAGCTCATTTGGGAAGATGAGTAGAAAGGTAAAGATATTAATGGCTAGTGTTTTTGGTGGACTTGGTCTTCTTATCCTTGTGTCTTTGTTTCTGGTTCTTCTTGTTCTTCTAAGCTGGCACAAGAACAGTACAAATCAAAGAGCCAGTGTGGGCCCTGCTGATGACATTCCTGGAATTTCGATAAATTTTTTGAATTTAGGAAATGCATTTACATACCAAGAGCTTCTTCATGCTACAAATGGTTTCAGTGATGCAAACCTTATCAAGCAGGGCCATTCTGGTGATCTTTTCCGGGGTATGTTGGAAGGTGGGACCCAAGTGGTTATCAAGAAGGTTGACTCTCGATTGGTTAAAGAGGAAGCGTATTTGCTGGAGTTGGATTTCTTTAGCAAGTATAGACATGATCGGTTTGTTCCCCTTTTGGGGCATTCCTTAGAGAATAGGGATGAGAAATTGATTGTTTACAAGTATATGGTGAATGGAGACTTGTGGAGTTCTTTGATTAGGAAAAGTAATGTGGGTGAGCGGAACTTGCAGTCGCTGGATTGGATTACGAGATCAAAAATTGCTTTAGGTGCTGCAGAGGGGTTGACTTTTCTTCATGAATGTGCTCTGCCTCTTGTTCATAGAGACGTTCAAGCAAGTAGCATACTTCTTGACGATAAATTTGAAGTCCGACTCGGAAGCTTTAGTGACGTTTCTGCTCAAGGAGGAGACTCCCATCAGAACAGACTTTCCAGATTCCTATGTTTCGCACAGTCATCATCCAAACAATTCTCTTCTGGTTCTGTGACAGCAGTTTGTTCGTATGATGTATACTGTTTTGGGAAAGTTTTGCTCGAGCTAGTAACAGGCAAGCTCAGAATCAGCTCTTCCAATGACAACGACACCCACGTGAAAGAATGGTTAGAGCAGACCCTAGCATGCATCAGCATCTACGACAAAGAGCTCGTTACAAAAATCATGGACCCGACTCTACACATAGATGAGGACTTTCTAGAAGAAGTGTGGGCCATGGCTGTGGTTGCCAAGTCATGCCTCAATCCGAAGCCTTCGAGACGGCCTGTCATGAGATATGTACTCAAGGCCTTGGAAAATCCTTTACAGCTCGTAAGGGAAGAGAAATGCTCAGGCCGGGTCGGGATGTGGAATGCTGCCCTGTTTGGTGGTAGCTGGCGTGGTGTGAGCTTGTCGGATATGGCAGAGGGTCCAGTGGGCCCCGTGGAGAAGTTCGGAGGTGGGAGTGGGGATGGGGGTTTGTTAAAGAGAAGGCATTCGAGGGAGACTGTTGCGGAGCAGTTTGATGTGAATGTGGAGGGAACATAG 1569 43.79 MLYGDVMLEFRRFRFVDLSWNYLEGKIPDYMVRNSSLLNNNCLQNVSNQRGLIECSSFYSQRGLKFDEFGISNSTEEITALSSFGKMSRKVKILMASVFGGLGLLILVSLFLVLLVLLSWHKNSTNQRASVGPADDIPGISINFLNLGNAFTYQELLHATNGFSDANLIKQGHSGDLFRGMLEGGTQVVIKKVDSRLVKEEAYLLELDFFSKYRHDRFVPLLGHSLENRDEKLIVYKYMVNGDLWSSLIRKSNVGERNLQSLDWITRSKIALGAAEGLTFLHECALPLVHRDVQASSILLDDKFEVRLGSFSDVSAQGGDSHQNRLSRFLCFAQSSSKQFSSGSVTAVCSYDVYCFGKVLLELVTGKLRISSSNDNDTHVKEWLEQTLACISIYDKELVTKIMDPTLHIDEDFLEEVWAMAVVAKSCLNPKPSRRPVMRYVLKALENPLQLVREEKCSGRVGMWNAALFGGSWRGVSLSDMAEGPVGPVEKFGGGSGDGGLLKRRHSRETVAEQFDVNVEGT 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8529363 8531547 - Conep10aG0120800.1 Cone10ag1173 446971

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1173 522 ProSiteProfiles Protein kinase domain profile. 163 450 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag1173 522 FunFam Predicted protein 135 238 - -
Cone10ag1173 522 FunFam Putative LRR receptor-like serine/threonine-protein kinase 239 464 - -
Cone10ag1173 522 Gene3D Phosphorylase Kinase; domain 1 140 238 - -
Cone10ag1173 522 SUPERFAMILY Protein kinase-like (PK-like) 145 445 IPR011009 -
Cone10ag1173 522 PANTHER RECEPTOR-LIKE PROTEIN 55 11 446 - -
Cone10ag1173 522 Gene3D Transferase(Phosphotransferase) domain 1 239 459 - -
Cone10ag1173 522 Pfam Protein tyrosine and serine/threonine kinase 169 402 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1173 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1173 Cone-Chr10:8529363 Cone4ag1911 Cone-Chr4:13583060 5.56E-153 dispersed
Cone10ag1173 Cone-Chr10:8529363 Cone12ag1153 Cone-Chr12:9188170 1.05E-175 wgd
Cone10ag1173 Cone-Chr10:8529363 Cone8ag1202 Cone-Chr8:10219306 3.87E-193 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g596 . . Bda06g00940 . . Bpe12g00262 . . Cmo19g00681 . Cma02g00401 Cma20g00853 Car02g00262 Car20g00736 . Cpe04g00119 Cpe15g00542 Bhi05g01234 . . . . . . Cla02g00520 Cam02g0533 Cec02g0535 Cco02g0543 Clacu02g0533 Cmu02g0528 Cre02g0860 Cone12ag1153 Cone8ag1202 . Cone10ag1173 Lsi10g00365 . Chy11g00382 Cme01g01414 . . Bda15g00008 Bda14g00553 . . . Bma08g00556 . Cmo02g00407 Cmo20g00862 . Cma19g00668 . Car19g00511 . Cpe05g01256 Bhi10g02017 . . . . . . . . . . . . . Lsi11g01105 Csa02g01252 Chy01g00782 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001821 3 2 2 1 2 2 4 1 1 2 2 1 4 2 1 3 1 3 4 1 2 1 2 2 2 3 1 4 1 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81844 PF00096 zf-C2H2 0.00038 CL0361 Cone PK