Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1184 ATGGCGGTTGTGTCGACGTCTCTCGCATCCATCCGATTATCATGCTCCAAATCCGAAAGTTCTCAGTCTCTCGTTCAACATGTCACCTCTCACATCCGCCTTGCTGCCTCTCGCAAAGGCTCTCGTGGCATTGTTGCCATGGCTGGCACTGGCAAGTTCTTTGTTGGTGGAAACTGGAAGTGTAATGGCACTAAGGAATCTATAAGCAAGCTCGTCTCTGACTTGAACGAAGCTAAATTGGAAAGTGATGTTGATGTTGTCGTAGCACCTCCATTTGTTTACATTGATAAGGTAAAGAGCACGTTAAGAACAGAGATTGAGATTTCTGCTCAAAACTCCTGGGTTGGTAAAGGTGGTGCTTTCACAGGAGAAATCAGTGTTGAACAATTGAAAGATACCGGCTGCACGTGGGTCATTCTTGGGCACTCTGAGCGGAGGCATGTTATTGGTGAAGATAACCAGTTCATAGGTAAGAAAGCTGCTTATGCAGTGAGTGAGGGTCTTGGAGTAATAGCTTGCATTGGGGAACTATTATCAGAAAGGGAAGCTGGAAAGACATTTGATGTCTGTTCTGAGCAGTTGAAAGCTTATGCAGATGCTATACCCAGTTGGGACAATGTCGTCATTGCATATGAGCCTGTGTGGGCCATTGGGACGGGAAAAGTAGCTACGCCTCAACAGGCTCAAGAAGTACATGCAGCTCTTCGCGATTGGCTTAAGAAAAACATCTCCCCAGAAGTAGCATCAAAAACTCGTATCATCTATGGAGGGTCTGTAAATGGAGGCAATAGTGCTGAGCTGGCTAAGAAAGAAGATATTGATGGTTTTCTAGTTGGAGGAGCTTCTCTTAAGGGCCCTGAATTTGCTGCCATCATCAATTCCGTAACGGCAAAGAAAGTTGCTGCCTAA 909 45.65 MAVVSTSLASIRLSCSKSESSQSLVQHVTSHIRLAASRKGSRGIVAMAGTGKFFVGGNWKCNGTKESISKLVSDLNEAKLESDVDVVVAPPFVYIDKVKSTLRTEIEISAQNSWVGKGGAFTGEISVEQLKDTGCTWVILGHSERRHVIGEDNQFIGKKAAYAVSEGLGVIACIGELLSEREAGKTFDVCSEQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPQQAQEVHAALRDWLKKNISPEVASKTRIIYGGSVNGGNSAELAKKEDIDGFLVGGASLKGPEFAAIINSVTAKKVAA 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8730528 8739045 + Conep10aG0121900.1 Cone10ag1184 446982

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1184 302 ProSiteProfiles Triosephosphate isomerase (TIM) family profile. 52 294 IPR000652 GO:0004807(InterPro)
Cone10ag1184 302 Gene3D Aldolase class I 25 301 IPR013785 -
Cone10ag1184 302 NCBIfam triose-phosphate isomerase 54 284 IPR000652 GO:0004807(InterPro)
Cone10ag1184 302 Hamap Triosephosphate isomerase [tpiA]. 51 294 IPR022896 GO:0004807(InterPro)|GO:0006096(InterPro)
Cone10ag1184 302 Pfam Triosephosphate isomerase 54 294 IPR000652 GO:0004807(InterPro)
Cone10ag1184 302 FunFam Triosephosphate isomerase 47 296 - -
Cone10ag1184 302 CDD TIM 53 293 IPR000652 GO:0004807(InterPro)
Cone10ag1184 302 ProSitePatterns Triosephosphate isomerase active site. 210 220 IPR020861 GO:0004807(InterPro)
Cone10ag1184 302 PANTHER TRIOSEPHOSPHATE ISOMERASE 50 295 IPR000652 GO:0004807(InterPro)|GO:0004807(PANTHER)|GO:0005829(PANTHER)|GO:0006094(PANTHER)|GO:0006096(PANTHER)|GO:0019563(PANTHER)|GO:0046166(PANTHER)
Cone10ag1184 302 SUPERFAMILY Triosephosphate isomerase (TIM) 49 294 IPR035990 GO:0004807(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1184 K01803 - - csv:101213372 504.597
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1184 Cone-Chr10:8730528 Cone4ag1059 Cone-Chr4:9226237 1.27E-110 dispersed
Cone10ag1184 Cone-Chr10:8730528 Cone3ag1197 Cone-Chr3:30634208 2.39E-196 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g110 . . . Bda08g01041 . . Bma05g00412 . . . Cma02g00330 Cma20g00770 Car02g00210 Car20g00673 . . . . . . . . . . . . . . . . . . . . Cone10ag1184 Lsi10g00462 . Chy11g00296 . . . . . . . . . . Cmo02g00325 Cmo20g00770 . . . . Cpe16g00296 . Bhi10g01892 . . . Hepe08g0946 . . Cla02g01114 Cam02g1187 . . Clacu02g1177 Cmu02g1137 . . Csa02g01353 . Cme11g00418
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008639 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35