Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1185 ATGATCCTTTGGATCCGAAAGGGAACATTACTGTTTCTTTTGACATTTTGCAATGGAAACATGAGGGTTATGTGGTCAGTATACTCTGATTTTGTTTCCCAGGCAAGGGTAACAATTCACAACTACTATCAATATAGGCATATCGACAAACCAGGGTGGAAGCTAGGTTGGACATGGGCAAATAATGAAGTAATTTGGTCAATGAGAGGTGCATTTGCAGCTCAGCAGGGAAATTGCTCATCCTTCAAATATGACACACCACACTCCTGCATGAAGAACCCTCTCGTTCTCGATCTCTCGCCAGAAATAGCATTACCGGAACAGATGTCAGAACATTGCTGCCATGATGGCCTTCTTTCAGCATCGGCTATTAACCCTTCCAAGTCATTCTCTTCTTTCGAAATGACAGTCGGAAACTTGGGGCCCGGTCCAGGATATAATTCCGAACAAGTGCCTCTAAATCTTACTTTAATGGGGCCCGGTCCAGGATATACCTGTAGCCAACTTGTGGACGCTGATCCTACCGTTTCTTCAGATATAGGAGGTCGAAGACAGGTTCAGGTTTTCAGAACATGGAAATCAATCTGTACTTACTCTCAGTTTTTGGCGAACAAAACACCGGTCTGTTGTGCTTCTTTCTCAACATTTTACAATCCTAGTATCACATCATGTCCTCTATGTAGCTGTGGATGCAGGGAAGCAGATCGAGCAACTGTTTCGTGTATAAGAGAAGCCTACCCCTCAAAATCGACGGATTTCATGAGCAACCTCGAGACGATCCAATGCAGCGATCACATGTGCCCGATCCGTGTACATTGGCATATCAAGAACAATTACGCGAAACATTGGAGAGTTAAACTCACAGTTTCGAACTACAATTATGAGCGGAACTACTCCAACTGGAATGTACTAATTCAACATCCCGGTTTCAGACAATCGGAACTAATCAAGACATACAGTTTCAACACAACGATCCTTCAATCCCCTGCTTCTTCAGATGGAGTTGCTCTGTTTTGGGGCATAGAATATTACAACAGTGAGTTATTACAGGGTCATGAGTACAATGTGGGTGCGGTAACAACAGAGATTCTTCTCGAAAAGGACTTGGAATCGTTCACGTTAACAAACGGTTGGGCCTTTCCCCGGAAAATATATTTCAATGGAGAAGTCTGTGAAATGCCTTTTCCGGACAATTTTCCGATGCTGCCAAATGATAGTAGCTATAGGAATGATAATAAGCTTTCTCATGTCGTGGCGTTACTGTTGTATTTGTGTTTCAAGAGTTTAGTTTCTTGGTTTTGA 1302 42.86 MILWIRKGTLLFLLTFCNGNMRVMWSVYSDFVSQARVTIHNYYQYRHIDKPGWKLGWTWANNEVIWSMRGAFAAQQGNCSSFKYDTPHSCMKNPLVLDLSPEIALPEQMSEHCCHDGLLSASAINPSKSFSSFEMTVGNLGPGPGYNSEQVPLNLTLMGPGPGYTCSQLVDADPTVSSDIGGRRQVQVFRTWKSICTYSQFLANKTPVCCASFSTFYNPSITSCPLCSCGCREADRATVSCIREAYPSKSTDFMSNLETIQCSDHMCPIRVHWHIKNNYAKHWRVKLTVSNYNYERNYSNWNVLIQHPGFRQSELIKTYSFNTTILQSPASSDGVALFWGIEYYNSELLQGHEYNVGAVTTEILLEKDLESFTLTNGWAFPRKIYFNGEVCEMPFPDNFPMLPNDSSYRNDNKLSHVVALLLYLCFKSLVSWF 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8741514 8743268 - Conep10aG0122000.1 Cone10ag1185 446983

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1185 433 PANTHER PROTEIN COBRA 18 421 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Cone10ag1185 433 PIRSF COBRA 15 431 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Cone10ag1185 433 Pfam COBRA-like protein 34 199 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1185 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1185 Cone-Chr10:8741514 Cone12ag1205 Cone-Chr12:9440526 6.10E-151 dispersed
Cone10ag1185 Cone-Chr10:8741514 Cone8ag1257 Cone-Chr8:10467864 1.95E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g91 . . Bda06g00512 . . . . Bma12g00957 . . . . . . . . . Bhi05g01752 . . . . . . . . . . . . . Cone12ag1205 Cone8ag1257 . Cone10ag1185 . . . Cme01g01287 . . Bda15g01047 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008827 2 4 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 0 1 1 0 2 1 1 1 1 1 2 34