Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1190 ATGGGCCTCTCAAGTCTCCCAGCCCCATCTGAAGGAGTCCTGTGTGTCCTCCTAGTAAACACTGCCCTCTCCATTTCCATATTCAAAAGCATAGTCCGGTCCATTCTTCATGTCATCGGAATCCGCCTCTCTTCATCATCTTCATCTTCATCTACACCATCATCTATAGATTCAATTGAAACCACACCAATTTCCATCGACTTCCAAAGTACTAGTCATTCTGATGGATTCATAGAGGAATTCCGGACACGGGTCCCATCAATCCGGTTTGATAAAGTGTGTAGCTGTAAAAAACCAGACCATGATTGCTCGGTTTGCTTGACCCAGTTTGAGCCTGAATCGGAGATAAACAGTTTGTCTTGTGGACATGTTTTCCATAAGGCGTGCTTGGAGAAATGGCTTGATTGGAACATTACTTGTCCTCTTTGTAGAACTCCTTTGATTCCCGAAGAAGAGACCTCTTGCTTTTGGTGA 474 44.3 MGLSSLPAPSEGVLCVLLVNTALSISIFKSIVRSILHVIGIRLSSSSSSSSTPSSIDSIETTPISIDFQSTSHSDGFIEEFRTRVPSIRFDKVCSCKKPDHDCSVCLTQFEPESEINSLSCGHVFHKACLEKWLDWNITCPLCRTPLIPEEETSCFW 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8785417 8787223 + Conep10aG0122500.1 Cone10ag1190 446988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1190 157 SMART ring_2 103 143 IPR001841 -
Cone10ag1190 157 PANTHER - 1 157 IPR044249 -
Cone10ag1190 157 ProSiteProfiles Zinc finger RING-type profile. 103 144 IPR001841 -
Cone10ag1190 157 SUPERFAMILY RING/U-box 98 149 - -
Cone10ag1190 157 Pfam Ring finger domain 102 144 IPR001841 -
Cone10ag1190 157 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 149 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1190 Cone-Chr10:8785417 Cone15ag0411 Cone-Chr15:1932700 2.14E-16 dispersed
Cone10ag1190 Cone-Chr10:8785417 Cone3ag1272 Cone-Chr3:31560196 3.84E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1190 K16285 - gmx:100786803 224.557