Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1196 ATGGAGGAAACAGTAGAAACTTCTAACACGTTCAAATTTGCTGAGAAAAATCAGAACCAAAACAAAAATTGGATGGCACTTTCAGACCCCGAAAAAGCCAGTCCTAGTAAGAAAAACAACGACTCCGATTCAGACCAAAAAGTTCTAACCGAAAGCAACACAGCAGAAAGAACAGCAGAGTGGGGACTAGGTATGAAGTCGGATGCAGGAAGAGATAGTTTCAAGGCCTTAATAGGAAACATGACAAGAACATCAGGCGATGCAGATAGAAGCCGGACAACTTCATTAGAAAGGATCACCTCAGAATCAACAAAAACATATGACGATTCAAATTTCGGATTGGAATCGTCAAGAGAAATTCCTAAAGTTCCACAGGAATTGAAGGATGCTTTGTCTACATTACAACAAACATTTGTTGTTTCTGATGCTACAAAACCAGACTGTCCTATTATGTATGCCAGTAGCGGGTTTTTCACTATGACCGGTTACTCTTCCAAGGAGGTTATTGGACAGAATTGTCGATTTCTTCAGGGACCAGGCACGGATGAAGTTGAAGTTGCAAAGATTCGGCATGCTGTGAGAAATGGGAAGAGCTATAGTGGAAGATTATTGAACTATAAGAAGAATGGAACTCCTTTCTGGAATCTTCTAACTATCACTCCCATTAGAGATGGCAATGGAAAGACCATCAAGTTTATTGGAATGCAGGTTGAGGTCAGTAAATACACAGAAGGAGTGAATGATAAGGAATTACGTCCAAACGGATTGCCCAAGTCGTTAATCCGCTATGATGCTCGTCAAAAGGAGAAGGCGTTAGAATCAATTACAGAAGTTGTTCAGACTTTGAAACATCCAGAATCTCATATGAAGAACCATAATTCTATCAGTAAGATTGAAGAGCTCGAAAAATTCAACCTCAAAGATACTCTTACCAAGCCTACTGAATCTTCAAAACTTGATCCTCTCAGCAAAATCTCATATGAGAACATAGAAAAGAAATCAAGACTTCCATCTCGAATTTCTTCGTTGGGGTCTAAAAGAATGACATTGAGTTTTGGAAGCAAGCAAGAGCGAATTCCAAATATTGAACCGGAAATTTTGATGACCGAGGACATAGAAGAGCGTTCAGATAGTTGGGAGAGTTCAGATAGAGAAACAGATATAAGACAAGGGATAGATTTAGCAACAACCTTGGAAAGGATCGAGAAAAATTTTGTGATTTCTGATCCTAGACTTCCAGACAACCCAATTATCTTTGCATCTGATAGCTTTCTTGAATTGACGGAATATAGCCGGGAAGAGATTTTGGGAAGAAATTGCAGGTTTCTTCAAGGACCTGAAACTGATCAAGCAGCAGTACAGAAGATAAGAGATGCTATCAAAGAGCAAAGAGAGATCACTGTTCAGTTGATTAACTATACCAAGAGTGGTAAAAAGTTTTGGAATTTGTTCCATTTGCAACCTATGAAAGACCAAAAGGGCGAGCTTCAATACTTCATTGGCGTGCAACTAGATGGAACTGGAAGTGATCAGCCAGTGAAACCTCTATTAGAGCGACTTACAGAAGTAGCAGAAGAAGAAAGTGCTAAACTGGTGAAGGCTACTGCTGAAAATGTCGACGAGGCTGTTCGGGAACTTCCTGATGCCAACTTGAGGCCAGAAGATTTGTGGGCAATTCATTCTCAGCCTGTTTTTCCAAAACCTCACAAGAAGGACAGCTCCTCTTGGAAAGCAATACAAAAAATTATTGACCGTGGCGATGCAATTGGTCTCAATCATTTTAAGCCCCTAAAACCATTGGGTTATGGAGATACTGGCAGTGTGCATTTAGTGGAACTGATAGGTACAGGTGAACTTTATGCTATGAAGGCAATGGAGAAGTCCGTAATGATGAACCGTAACAAGGTTCATCGAGCATGCATGGAAAGGGAAATCATTTCACTTTTAGATCATCCTTTTCTTCCAACTCTGTACACTTCATTTCAGACTCCTACACATCTTTTTCTGGTAACTGAATTTTGTCATGGTGGAGAGTTGTTTGCTTTGCTCGACAGACAACCAATGAAATCATTTAACGAGGAATCTTCAAGGTTCTATGCAGCAGAGGTTGTTATTGGGTTGGAATATCTTCACTGTTTAGGGATCATATACCGTGACTTGAAACCTGAAAACATTCTACTACAGAAGGATGGACATGTTGTATTAACAGATTTCGATTTGTCATTTTTGACATCCTGTAAACCACAGATTCTAAAGCAGGCAGTGCCTAATAATAGGAGATCTAGGAGTGAACCACCTCCTATATTTGTTGCCGAACCATTTACACAATCAAATTCTTTCGTTGGAACTGAAGAATACATCGCTCCTGAGATTATTACGGGTGCGGGGCATAGTAGCTCTATTGATTGGTGGGCTCTTGGTATTTTGTTGTATGAGATGCTTTATGGTAGAACGCCTTTTAGGGGAAAGAACAGGCAGAAGACTTTTTCCAACATCTTGTACAAAGATCTCACTTTTCCATCTAGCATTCCGGCAAGTCTAGAAGCAAGGCAGCTGATAAATGGTTTGCTGCAAAGAGACCCTGCCCAGCGTTTAGGGTTTGATACTGGGGCCCGCGAAATCAAACATCATCCTTTTTTCCACAACATTAATTGGCCTCTAATCCGGTGCATGACCCCACCTCCATTGGAGGTACCTCTTCAATTGATCGAAAAGGATCCAACAGCCAAGGATATAGACTGGGAAGATGATGGTGTGCTTGTTCATTCTCTGGAGTTGGACTTCTTCTAA 2790 40.65 MEETVETSNTFKFAEKNQNQNKNWMALSDPEKASPSKKNNDSDSDQKVLTESNTAERTAEWGLGMKSDAGRDSFKALIGNMTRTSGDADRSRTTSLERITSESTKTYDDSNFGLESSREIPKVPQELKDALSTLQQTFVVSDATKPDCPIMYASSGFFTMTGYSSKEVIGQNCRFLQGPGTDEVEVAKIRHAVRNGKSYSGRLLNYKKNGTPFWNLLTITPIRDGNGKTIKFIGMQVEVSKYTEGVNDKELRPNGLPKSLIRYDARQKEKALESITEVVQTLKHPESHMKNHNSISKIEELEKFNLKDTLTKPTESSKLDPLSKISYENIEKKSRLPSRISSLGSKRMTLSFGSKQERIPNIEPEILMTEDIEERSDSWESSDRETDIRQGIDLATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDQAAVQKIRDAIKEQREITVQLINYTKSGKKFWNLFHLQPMKDQKGELQYFIGVQLDGTGSDQPVKPLLERLTEVAEEESAKLVKATAENVDEAVRELPDANLRPEDLWAIHSQPVFPKPHKKDSSSWKAIQKIIDRGDAIGLNHFKPLKPLGYGDTGSVHLVELIGTGELYAMKAMEKSVMMNRNKVHRACMEREIISLLDHPFLPTLYTSFQTPTHLFLVTEFCHGGELFALLDRQPMKSFNEESSRFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFLTSCKPQILKQAVPNNRRSRSEPPPIFVAEPFTQSNSFVGTEEYIAPEIITGAGHSSSIDWWALGILLYEMLYGRTPFRGKNRQKTFSNILYKDLTFPSSIPASLEARQLINGLLQRDPAQRLGFDTGAREIKHHPFFHNINWPLIRCMTPPPLEVPLQLIEKDPTAKDIDWEDDGVLVHSLELDFF 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8825735 8832422 + Conep10aG0123100.1 Cone10ag1196 446994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1196 929 Gene3D Transferase(Phosphotransferase) domain 1 678 894 - -
Cone10ag1196 929 Gene3D PAS domain 379 546 - -
Cone10ag1196 929 ProSiteProfiles PAC domain profile. 464 518 IPR000700 -
Cone10ag1196 929 CDD PAS 413 505 IPR000014 -
Cone10ag1196 929 ProSitePatterns Protein kinases ATP-binding region signature. 600 623 IPR017441 GO:0005524(InterPro)
Cone10ag1196 929 FunFam LOV domain-containing protein 379 546 - -
Cone10ag1196 929 SUPERFAMILY PYP-like sensor domain (PAS domain) 144 236 IPR035965 -
Cone10ag1196 929 CDD PAS 150 239 IPR000014 -
Cone10ag1196 929 CDD STKc_phototropin_like 593 904 - -
Cone10ag1196 929 ProSiteProfiles Protein kinase domain profile. 594 880 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag1196 929 Pfam PAS domain 413 505 IPR000014 -
Cone10ag1196 929 Pfam PAS domain 144 240 IPR000014 -
Cone10ag1196 929 SMART pas_2 125 194 IPR000014 -
Cone10ag1196 929 SMART pas_2 392 461 IPR000014 -
Cone10ag1196 929 MobiDBLite consensus disorder prediction 7 27 - -
Cone10ag1196 929 PANTHER FLIPPASE KINASE 1-RELATED 541 898 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cone10ag1196 929 Pfam Protein kinase domain 597 880 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag1196 929 Gene3D Phosphorylase Kinase; domain 1 593 677 - -
Cone10ag1196 929 FunFam Putative LOV domain-containing protein 137 293 - -
Cone10ag1196 929 ProSitePatterns Serine/Threonine protein kinases active-site signature. 715 727 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone10ag1196 929 SMART pac_2 200 242 IPR001610 -
Cone10ag1196 929 SMART pac_2 467 509 IPR001610 -
Cone10ag1196 929 SMART serkin_6 594 880 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag1196 929 FunFam Putative LOV domain-containing protein 678 892 - -
Cone10ag1196 929 NCBIfam PAS domain S-box protein 149 240 IPR000014 -
Cone10ag1196 929 NCBIfam PAS domain S-box protein 416 505 IPR000014 -
Cone10ag1196 929 SUPERFAMILY Protein kinase-like (PK-like) 571 911 IPR011009 -
Cone10ag1196 929 Gene3D PAS domain 137 306 - -
Cone10ag1196 929 MobiDBLite consensus disorder prediction 80 115 - -
Cone10ag1196 929 ProSiteProfiles PAC domain profile. 197 251 IPR000700 -
Cone10ag1196 929 Coils Coil 517 537 - -
Cone10ag1196 929 MobiDBLite consensus disorder prediction 97 113 - -
Cone10ag1196 929 SUPERFAMILY PYP-like sensor domain (PAS domain) 409 505 IPR035965 -
Cone10ag1196 929 ProSiteProfiles PAS repeat profile. 123 196 IPR000014 -
Cone10ag1196 929 ProSiteProfiles PAS repeat profile. 390 463 IPR000014 -
Cone10ag1196 929 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1196 Cone-Chr10:8825735 Cone1ag0687 Cone-Chr1:6419048 0 dispersed
Cone10ag1196 Cone-Chr10:8825735 Cone12ag1283 Cone-Chr12:9795258 0 wgd
Cone10ag1196 Cone-Chr10:8825735 Cone3ag1262 Cone-Chr3:31437606 0 wgd
Cone10ag1196 Cone-Chr10:8825735 Cone8ag1349 Cone-Chr8:10827919 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81845 PF18829 Importin_rep_6 1.90E-05 CL0020 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1196 K20715 - csv:101215355 1300.8