Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1200 ATGTCCGGCTTCGGATCTACCACTCCCAGTTCACTCTACTCCCACAGGCTCCTCGGACAAGGACTCGAGCTACAAAGACCATCACAAACACAACTAACCGGTAGCAACAAAGACTTCCGAGAAGACGATGAGGAAAATTCGGGTCCCACCGATCCAGCAACAACCAGCACTGGTACTACTTCATCAGACCGTAGGTCCCGAGGCCGTCCTGCAGGCTCGAAGAACAAACCGAAACTGCCGATCATCATAACTCGGGACAACCCAAGTGCCCTAAGATCTCATGTCCTAGAGATATCTTCAAGTTCGGACATAGTTGAAGCCATCACAAACTATGCAAGAAGAAGAGGGAGAGGAGTTTGTATCCTAAGTGGAACTGGATACGTCACCAATGTCACCTTGCGCCAACCAGGGGGCCCATCTGGGAGTGTGATTACATTGCCTGGCCGGTTTGAGATTCTGTCTTTGACTGGGAGCGCTTTGCCGCCTCCTGCTCCACCAGGAGCTGGAGGTCTGAAGATCTACCTGGCAGGGGGGCAAGGACAAGTTGTTGGAGGGAACGTTTCAGGTCAATTGACGGCTTTGGGTTCTGTAGTATTAATGGCTGCATCATTTATGAACGCCGTGTATGATAGGCTTCCGCTTGATGATCAGGATCAGGAGTCACATGTGCCAGTCCAACCAGCAGTGTCTCAAACTTCAGATGTTAGAGGCAGTGGTGGTGGTGGTGGTGGTGGTGATGGCAGCGGCGGCATTAGTGTCAGTGGTGGTGGTGATGGTGGTGTTCCTTTCTACAATTTTGGTGTGAGCATGGGTAGTAGTACTAATACTCATGGTTTTCCTGGACATGATGCGTTTGGTTGGAGTGGTAGCGCATCAAGGCTTCCATTTTAA 891 50.84 MSGFGSTTPSSLYSHRLLGQGLELQRPSQTQLTGSNKDFREDDEENSGPTDPATTSTGTTSSDRRSRGRPAGSKNKPKLPIIITRDNPSALRSHVLEISSSSDIVEAITNYARRRGRGVCILSGTGYVTNVTLRQPGGPSGSVITLPGRFEILSLTGSALPPPAPPGAGGLKIYLAGGQGQVVGGNVSGQLTALGSVVLMAASFMNAVYDRLPLDDQDQESHVPVQPAVSQTSDVRGSGGGGGGGDGSGGISVSGGGDGGVPFYNFGVSMGSSTNTHGFPGHDAFGWSGSASRLPF 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8859148 8860038 - Conep10aG0123500.1 Cone10ag1200 446998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1200 296 CDD DUF296 92 158 IPR005175 -
Cone10ag1200 296 MobiDBLite consensus disorder prediction 1 15 - -
Cone10ag1200 296 MobiDBLite consensus disorder prediction 1 81 - -
Cone10ag1200 296 SUPERFAMILY AF0104/ALDC/Ptd012-like 88 218 - -
Cone10ag1200 296 MobiDBLite consensus disorder prediction 218 254 - -
Cone10ag1200 296 Pfam Plants and Prokaryotes Conserved (PCC) domain 92 205 IPR005175 -
Cone10ag1200 296 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 41 288 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Cone10ag1200 296 Gene3D - 91 222 - -
Cone10ag1200 296 ProSiteProfiles PPC domain profile profile. 88 226 IPR005175 -
Cone10ag1200 296 MobiDBLite consensus disorder prediction 223 237 - -
Cone10ag1200 296 FunFam AT-hook motif nuclear-localized protein 91 220 - -
Cone10ag1200 296 MobiDBLite consensus disorder prediction 49 66 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1200 Cone-Chr10:8859148 Cone11ag0388 Cone-Chr11:1912189 1.46E-70 dispersed
Cone10ag1200 Cone-Chr10:8859148 Cone3ag1257 Cone-Chr3:31399475 6.20E-154 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1200 - - - 0.0