Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1202 ATGGGTGTTCTTGAAGCCACATTTTTGTACTTGGTTCTTCTCCAAGCATGCATTATCTCCTCAGCAATAGATGAGGAATGGAAAGCTGCTACTGCAACTTATTCTAAAGAAACAGATGGGTCTATTGTTACAGAAGGAGCTTGTGGTTATGGGGACCTACACAGGATAAGCTATGGAAAGCACAGTGCCGGGTTGAGCAGCAGTCTGTTCAACAGAGGAAGCAGCTGTGGAGCTTGTTATGAGCTGAGATGTGTTGACCACATCCTATGGTGTTTGCAAGGAAGCCCAACTGTTGTTTTAACTGCTACTGATTTCTGTCCTCCAAATTTGGGGCTTTCTTCTGATTATGGTGGGTGGTGTAATTTCCCACAACAACACTTTGAGATGTCTGAGCCTGCCTTTGCCCAAATTGCTGAGATTAAACAAGCTGATATTGTGCCTGTTCAATATAGAAGGGTGAGATGTGATAGAGCAGGAGGAGTGAGGTTCACTATGAGTGGGAACCCTCATTTCCATCAAGTTCTAATCACAAATGTTGGAATGGATGGTGAAGTGGTGGGTGTGAAAATGAAGGGATCAAGGACAGGGTGGATTCCGATGGCTAGAAATTGGGGTCAAATTTGGCAAAGCAACGTCAATCTTCAAGGCCAACCTCTGTCTTTCGAGGTCACCACTGGTGGCGGGAAAACCCTTGCCTCCTATAACGTCGCACCGCCTACCTGGCACTTCGGTCAGACCTTTGAAGGCAAGCAGTTTCTTCAATGA 765 45.88 MGVLEATFLYLVLLQACIISSAIDEEWKAATATYSKETDGSIVTEGACGYGDLHRISYGKHSAGLSSSLFNRGSSCGACYELRCVDHILWCLQGSPTVVLTATDFCPPNLGLSSDYGGWCNFPQQHFEMSEPAFAQIAEIKQADIVPVQYRRVRCDRAGGVRFTMSGNPHFHQVLITNVGMDGEVVGVKMKGSRTGWIPMARNWGQIWQSNVNLQGQPLSFEVTTGGGKTLASYNVAPPTWHFGQTFEGKQFLQ 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8884678 8886762 - Conep10aG0123700.1 Cone10ag1202 447000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1202 254 Gene3D - 160 252 IPR036749 -
Cone10ag1202 254 Pfam Lytic transglycolase 63 150 IPR009009 -
Cone10ag1202 254 Gene3D - 14 156 IPR036908 -
Cone10ag1202 254 SMART dpbb_1 62 150 IPR007112 -
Cone10ag1202 254 CDD DPBB_EXPA_N 26 155 - -
Cone10ag1202 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 160 IPR007112 -
Cone10ag1202 254 PANTHER EXPANSIN-A15 11 252 IPR002963 GO:0009664(InterPro)
Cone10ag1202 254 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576(InterPro)
Cone10ag1202 254 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576(InterPro)
Cone10ag1202 254 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576(InterPro)
Cone10ag1202 254 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576(InterPro)
Cone10ag1202 254 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576(InterPro)
Cone10ag1202 254 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576(InterPro)
Cone10ag1202 254 SUPERFAMILY PHL pollen allergen 158 249 IPR036749 -
Cone10ag1202 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 249 IPR007117 -
Cone10ag1202 254 SUPERFAMILY Barwin-like endoglucanases 26 178 IPR036908 -
Cone10ag1202 254 PRINTS Expansin signature 206 227 IPR002963 GO:0009664(InterPro)
Cone10ag1202 254 PRINTS Expansin signature 117 134 IPR002963 GO:0009664(InterPro)
Cone10ag1202 254 PRINTS Expansin signature 235 251 IPR002963 GO:0009664(InterPro)
Cone10ag1202 254 PRINTS Expansin signature 84 95 IPR002963 GO:0009664(InterPro)
Cone10ag1202 254 PRINTS Expansin signature 159 171 IPR002963 GO:0009664(InterPro)
Cone10ag1202 254 PRINTS Expansin signature 98 108 IPR002963 GO:0009664(InterPro)
Cone10ag1202 254 PRINTS Expansin signature 171 192 IPR002963 GO:0009664(InterPro)
Cone10ag1202 254 PRINTS Expansin signature 57 71 IPR002963 GO:0009664(InterPro)
Cone10ag1202 254 Pfam Expansin C-terminal domain 161 238 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1202 Cone-Chr10:8884678 Cone5ag0142 Cone-Chr5:611803 1.46E-94 dispersed
Cone10ag1202 Cone-Chr10:8884678 Cone1ag1621 Cone-Chr1:57641927 5.30E-95 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1202 - - - 0.0