Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1211 ATGTCAATGTATCTGATTTGGGTAGTGTCGTTTCTTCTGCTCGCTCTTGGACCATTCTCAATCTCAGAAGGAGCTTCTAATCGGCCGGATGTAGTACACGTTGGAGCCATTTTCACATTAAGTACTATTAATGGAAAAGTCTCAGAGATTGCTATGAAGGCTGCAGAGGAAGATGTCAATTCTCACCCAAGCAGCATTCTCAATGGAAGCAAATTAAATATTTCATTACACGACTCCAATTTCAGCGGATTTCTCGGAATTATAGGAGCATTAAAGTTCATGGAATCTGACACAGTTGCTATAATCGGTCCACAAAATTCCATAATGGCCCACATCCTCTCACACCTTGCGAATCAACTCCATGTCCCGATGCTATCATTCACGGCACTGGACCCCACCCTCTCACCTCTACAATATCCCTACTTCTTCCAAACAGCGCCAAATGATCAGTTTCAGATGACAGCTATAGCGGATCTGGTTAGTTATTACGGTTGGAGTGAAGTTATTGCAGTTTATTCGGATGATGATCAGAGCAGAAACGGTGTGATTTCATTGGGCGACAAACTTGCATTAAGAAGGAGCAAGCTTTCTTATAAAGCTACTCTTCCTCCTGATCCAAAGGCGACAGAAACTCAAGTAATGGATGAGTTGATTAAGATTAAAATGATGGAATCACGAGTTATTGTGCTTCATACTTATGCAAAAACTGGGCTATTAGTTTTTAAGGTGGCGCAAAGTCTTGGAATGCTGGAGAATGGATATGTATGGATAGCTTCTTCTTGGCTATCCACGGTTTTAGATTCAATTTCACCGATTCCGGAGAAGACTTTGAATTCCATTTACGGAGCTATTACATTTAGACTGCATACCCCTGATTCAGAAAGGAAAAGGGAGTTTATTGCAAGATGGAATGAGCTTAGTAATGGTTCGATTGGGCTAAATCCTTACGGTCTATATGCATATGATACTGTTTGGATGATTGCTTATGCTGTAAGAGAGTTGTTTGATCAAGGTAAGACTATTTCATTTTCTAATACTAATATAAGCTTTAATGGGTTAGAAGGAGGGGCATTGAATTTTAATGCTTTAAGCATTTTCGACCAGGGAAAGCAGTTTCTTAACACAATATTGAATACTAATATGACGGGTCTTTCGGGTCCTATTCAATTTGCTTCAGACAGGTCTCCTTTCCAACCTTCATATGATGTCATTAACATAATTAAAAACGGTCATGAACAAGTCGGTTACTGGTCAAACCATTCCGGGTTGACTGTTGAACCGCCTGAGAAATTTTACGGAAAACCCCCAAACCGTTCTATTTCAAACCAGCATATAAAAACTGTTGTGTGGCCAGGGGGAACAAGTGTAAAGCCCAAAGGGTGGGTTTTTCCAAACAATGGAAGGAAGTTAAGAATTGGGGTCCCTGACCGAGTTAGTTATCGTGACTTTGTTTCGAGGGAAAATGGGTCAAATATCATTCATGGATATTGCATTGATGTTTTCATTGCTGCTATAGATTTGCTTCCATATGCTGTCCCTTATCAGTTTGTCCCATACGGAGATGGTCACAAGAATCCGAGCTATTACCACCTTGTCAATATGATCTCTTCAGGAGGATTTGATGGTGTTGTTGGGGATGTTGCAATTGTAACAAACCGAACAAAAATCGTGGATTTCACTCAGCCTTATGCAGAGTCGGGGCTGGTTGTAGTGGCCGCAGTTAGAAAGTTAAATTCTAGCGCTTGGGCTTTTGCCAGGCCATTTACACCGATGATGTGGGCCGTAACTACAATCTTCTTCCTCGTAGTCGGAGCAGTCGTATGGATTCTCGAGCACAGAGAAAATGATGAATTCCGAGGCCCGCCTAGGAAACAGATCATTACGATTCTTTGGTTTAGCTTTTCTACCATGTTTTTTGCACATAGAGAGGATACAAAGAGTGCACTTGGACGAGTTGTTTTAATCATATGGCTTTTTGTGGTTCTAATAATCAACTCGAGCTACACTGCAAGCTTGACATCGATCCTAACGGTTCAGAAACTATCCTCGCCCATAGCTGGAATTGATTCATTAGTTACTAGCAATGAACGTATAGGATTCCAAATAGGCTCTTATGCTCAGAACTATTTATATGAAGAACTCAATATTCCAAAGTCTAGGCTTATCTCTCTTGGCTCGCCCGAAGAATATGCCATGGCTATTGAGAATGGAACTGTTGCTGCTGTAGTCGATGAACGGCCGTATATCGATCTGTTTCTCTCAGAATATTGCAAGTTTGCCATTAGAGGCCAAGCTTTCACCAAAAGTGGGTGGGGATTTGCATTTCCAAGAGACTCTCCTTTAGCTGTGGACATGTCAACTGCGATTCTGGCTCTATCAGAAAATGGCGATCTTCAAAGGATTCACAACAAGTGGTTTTCGAAAAAATCATGCGGTTCACAAAATTACGAGAGTAGATCCGATCAACTTCATTTACAAAGCTTCTGGGGACTATTCCTCATATCAGGAATCGCTTGTTTTCTTGCTCTACTAATATACTTTTGTATGATGTGTCTTCGGTTTAGAAGCCACTCTCCTGATGTCTCGGATGCTCTGACTAATATGACCTTGCCATCTGCACGGATCCAGACGTTCTTATCGTTTGTCGATAAGAAGGAAGATGAATCAGAAAATAAGTCGAAGAGGAAACGAAGAGATACTTTATCTAATGGAGAGGGGTTCAGAAATGGATCCAAGAGAATACAAGTTGAGATCTCTCATGGTGAAATGAATGATGCTGCGACTTGGCATAACTAA 2796 41.13 MSMYLIWVVSFLLLALGPFSISEGASNRPDVVHVGAIFTLSTINGKVSEIAMKAAEEDVNSHPSSILNGSKLNISLHDSNFSGFLGIIGALKFMESDTVAIIGPQNSIMAHILSHLANQLHVPMLSFTALDPTLSPLQYPYFFQTAPNDQFQMTAIADLVSYYGWSEVIAVYSDDDQSRNGVISLGDKLALRRSKLSYKATLPPDPKATETQVMDELIKIKMMESRVIVLHTYAKTGLLVFKVAQSLGMLENGYVWIASSWLSTVLDSISPIPEKTLNSIYGAITFRLHTPDSERKREFIARWNELSNGSIGLNPYGLYAYDTVWMIAYAVRELFDQGKTISFSNTNISFNGLEGGALNFNALSIFDQGKQFLNTILNTNMTGLSGPIQFASDRSPFQPSYDVINIIKNGHEQVGYWSNHSGLTVEPPEKFYGKPPNRSISNQHIKTVVWPGGTSVKPKGWVFPNNGRKLRIGVPDRVSYRDFVSRENGSNIIHGYCIDVFIAAIDLLPYAVPYQFVPYGDGHKNPSYYHLVNMISSGGFDGVVGDVAIVTNRTKIVDFTQPYAESGLVVVAAVRKLNSSAWAFARPFTPMMWAVTTIFFLVVGAVVWILEHRENDEFRGPPRKQIITILWFSFSTMFFAHREDTKSALGRVVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIAGIDSLVTSNERIGFQIGSYAQNYLYEELNIPKSRLISLGSPEEYAMAIENGTVAAVVDERPYIDLFLSEYCKFAIRGQAFTKSGWGFAFPRDSPLAVDMSTAILALSENGDLQRIHNKWFSKKSCGSQNYESRSDQLHLQSFWGLFLISGIACFLALLIYFCMMCLRFRSHSPDVSDALTNMTLPSARIQTFLSFVDKKEDESENKSKRKRRDTLSNGEGFRNGSKRIQVEISHGEMNDAATWHN 931
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8985690 8990770 - Conep10aG0124600.1 Cone10ag1211 447009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1211 931 Gene3D - 49 398 - -
Cone10ag1211 931 Pfam Bacterial extracellular solute-binding proteins, family 3 530 591 IPR001638 -
Cone10ag1211 931 SUPERFAMILY Periplasmic binding protein-like I 26 462 IPR028082 -
Cone10ag1211 931 FunFam Glutamate receptor 581 711 - -
Cone10ag1211 931 Gene3D - 581 714 - -
Cone10ag1211 931 Gene3D - 148 423 - -
Cone10ag1211 931 MobiDBLite consensus disorder prediction 889 908 - -
Cone10ag1211 931 SMART GluR_14 471 808 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone10ag1211 931 MobiDBLite consensus disorder prediction 889 903 - -
Cone10ag1211 931 FunFam Glutamate receptor 707 810 - -
Cone10ag1211 931 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 892 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cone10ag1211 931 SUPERFAMILY Periplasmic binding protein-like II 447 808 - -
Cone10ag1211 931 PIRSF IGluLR_plant 2 928 IPR017103 -
Cone10ag1211 931 FunFam Glutamate receptor 148 306 - -
Cone10ag1211 931 PRINTS Metabotropic glutamate GPCR signature 101 127 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Cone10ag1211 931 PRINTS Metabotropic glutamate GPCR signature 152 168 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Cone10ag1211 931 PRINTS Metabotropic glutamate GPCR signature 168 185 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Cone10ag1211 931 PRINTS Metabotropic glutamate GPCR signature 133 152 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Cone10ag1211 931 FunFam Glutamate receptor 465 581 - -
Cone10ag1211 931 SMART AABind_6 469 809 IPR001638 -
Cone10ag1211 931 Pfam Ligand-gated ion channel 808 839 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone10ag1211 931 CDD GluR_Plant 468 806 - -
Cone10ag1211 931 Gene3D - 727 813 - -
Cone10ag1211 931 Gene3D - 465 580 - -
Cone10ag1211 931 Pfam Receptor family ligand binding region 49 408 IPR001828 -
Cone10ag1211 931 CDD PBP1_GABAb_receptor_plant 33 427 IPR044440 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1211 Cone-Chr10:8985690 Cone12ag0877 Cone-Chr12:7816693 0 dispersed
Cone10ag1211 Cone-Chr10:8985690 Cone12ag1294 Cone-Chr12:9853275 0 wgd
Cone10ag1211 Cone-Chr10:8985690 Cone8ag1337 Cone-Chr8:10774452 2.53E-153 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1211 K05387 - rcu:8270549 1325.46