Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1214 ATGCGCTTTCCAGTAAATCAGTTTGGTTCTAAGCTTCCTAATTGGAATTTAAGGATCAAAGAATCATCATCTAATGGAAAATGGAGACAAGTAATTTCCCAGTACCAGGACATGCAAAAGGCTGAGCAACATCTAACAGATCCTTCAGTTTTCCCTTTACTTCTCAAGGCATGCTCAAACATATCTTTTAAACTGGGAAAAACTATGCATGGATGCTTAATCAAGCAAGGATTTGAATCATTCACTTCCATTGCTAACTCCAATATAGACTTTTACATTAAATGGGATGACTTGGATTCTTCAGAGATTGCTTTTAATTGCTTAGAAAATAAAGATTCCATTTCTTGGAATATAATTGTATATGGAAGCCTTTGCCATGGTTCTTTAGAAGGATTTTGGTGGTTTAATAAGGCGAGATTTTCTGGTTTTCGGCCGAATATTTCCACGTTGGTCCATATAATTCAAGCATTTCGTGATCTTAAACTTTTTCATGAAGGATTAGAACTTCATGGTTATATAATTAGAAGTGGGTTTGAATCTATTGCTTCAGTACAAAACTCTATGCTGAATTTCTATATTGACATGGATATGCGTAATGCATGGAAGCTGTTTGATGGAATGTCTGACAGAGATATCATCTCTTGGAGTGTTATGATTAGAGGTTATGTGCAAAGTGAGGAAGCTCTAATTGGCTTAAAGATGTTTAAAAATATGTTATCCAGATTTGATATGAAACCAGATGGAGTAATTTTGGTTACTATTCTTAAAGCATGTGCTTTTCTAGGTGAAGTGATTGTGGGAAAACTTTTTCATGGATTAGTCATAACAGGAGGCTTTGACTGTGATTTGTTTGTTGGTAACTCTTTGATCGATATGTATTCGAAATGCAGGGATGTTGAATTGGCTTTGACCATTTTCAAGGAAATGCCTCAAAGGAACATTGTCTCGTGGAATTCCCTCTTGTCTGCCTATGTTTTTAATAAAAATCATTTGAAAGCTCTCAATCTGTTATACTCAATGGAGAAAGAAGAAGGAATTGAGAAAGATGAAGTGACTCTGGTGAATATTCTTCAAACATGTAAGGATCTTATGCATGGGCTAAACTGCAAGTCGGTCCATTGTGTAGTTATCAGGCAGGGATATGAATCAAATGAAATAGTAGTGAATTCTCTAATTGATGCTTATGCAAAGTGCAATTTGATTAAAATTGCTTGTCCCCTTTTTTATGGAATGAGTAAAATGGATGTGGTTTCGTGGAGCACAATGATTTCAGGGTTTACTTACTGTGGAATGCCTAATAAAGCAATAAATGCCTTCAAGCTAATGAACATGGAAGAAGTGAAACCCAATAAGGTAAGCATTATCAATCTTCTTGAAGCTTGTGCTGTTCATTCTGAATTGAAGATGTCAAAATGGGCACATGGTATTGCTACTAAAACTGGTCTGGCTACTGATGTGGCAGTTGGAACTGCAATTATCAACATGTACTCGAAGTGCGGTGAAATAGAATCCTCAAAACAAGCCTTTGATCAAATTACTGAGAAAAATGTTGTGTCGTGGAGTGCCATGATAGCAGCATGTGGTATGAATGGCCTTGGAAAGGAAGCATTGGCTTTGGTAGAAAAAATGAAGGAAAATGGTGTTAACCCAAATGACATAACTGCCCTTTCATTATTATCGGCTTGTAGCCATGGAGGGTTTGTTGAAGAAGGGCTTTCTTTTTTTGAATCCATGGTTCTAGGACATGGACTTGAGCCTTCATTGAAACATTACTCATGTATAGTAGATATGTTGGGTCGAGCAGGGAAGGTTGACAAAGCATTGGAATTGATCGAGAACATGCCTAAAGGAATAAAGGTTGGTGCAAGTGCTTGGGGAGCATTCTTGAGTTCTTGTAAAAACTATGGGAATAGATTACTTGGGGAAGAAGCAATTGCTCGTGTTCTTGAATTAGAGCCTTTGAATTCGACTGGGTACATGGTTGCATCGAATTTGTATGCTACCAGTGGATTGTTATGCGAAGCTGCAAGGATGAGAAGGTTGGCTAAAGATAGAGGGGTAAAGGTAGTGGCTGGTTATAGTTTGGTGCATGTTAATAATGAAATCGGTAGGTTTATCGCCGGCGATAGTTCCCACCCACTAGCCGATGATATAAACTTCATGGCTGAACAGTTGCATAGTTTCATGAAGATGGAGTATCGGAATGCTTACGGTTTCCTTGAATGCTAA 2229 37.64 MRFPVNQFGSKLPNWNLRIKESSSNGKWRQVISQYQDMQKAEQHLTDPSVFPLLLKACSNISFKLGKTMHGCLIKQGFESFTSIANSNIDFYIKWDDLDSSEIAFNCLENKDSISWNIIVYGSLCHGSLEGFWWFNKARFSGFRPNISTLVHIIQAFRDLKLFHEGLELHGYIIRSGFESIASVQNSMLNFYIDMDMRNAWKLFDGMSDRDIISWSVMIRGYVQSEEALIGLKMFKNMLSRFDMKPDGVILVTILKACAFLGEVIVGKLFHGLVITGGFDCDLFVGNSLIDMYSKCRDVELALTIFKEMPQRNIVSWNSLLSAYVFNKNHLKALNLLYSMEKEEGIEKDEVTLVNILQTCKDLMHGLNCKSVHCVVIRQGYESNEIVVNSLIDAYAKCNLIKIACPLFYGMSKMDVVSWSTMISGFTYCGMPNKAINAFKLMNMEEVKPNKVSIINLLEACAVHSELKMSKWAHGIATKTGLATDVAVGTAIINMYSKCGEIESSKQAFDQITEKNVVSWSAMIAACGMNGLGKEALALVEKMKENGVNPNDITALSLLSACSHGGFVEEGLSFFESMVLGHGLEPSLKHYSCIVDMLGRAGKVDKALELIENMPKGIKVGASAWGAFLSSCKNYGNRLLGEEAIARVLELEPLNSTGYMVASNLYATSGLLCEAARMRRLAKDRGVKVVAGYSLVHVNNEIGRFIAGDSSHPLADDINFMAEQLHSFMKMEYRNAYGFLEC 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9041922 9044150 + Conep10aG0124900.1 Cone10ag1214 447012

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1214 742 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Cone10ag1214 742 FunFam Pentatricopeptide repeat-containing protein At4g14850 267 366 - -
Cone10ag1214 742 Pfam E motif 635 696 IPR046848 -
Cone10ag1214 742 NCBIfam pentatricopeptide repeat 417 450 IPR002885 -
Cone10ag1214 742 NCBIfam pentatricopeptide repeat 591 615 IPR002885 -
Cone10ag1214 742 NCBIfam pentatricopeptide repeat 518 551 IPR002885 -
Cone10ag1214 742 NCBIfam pentatricopeptide repeat 287 315 IPR002885 -
Cone10ag1214 742 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 516 550 IPR002885 -
Cone10ag1214 742 Pfam PPR repeat 583 614 IPR002885 -
Cone10ag1214 742 FunFam Pentatricopeptide repeat-containing protein At2g17210 490 706 - -
Cone10ag1214 742 Gene3D Tetratricopeptide repeat domain 490 690 IPR011990 GO:0005515(InterPro)
Cone10ag1214 742 Gene3D Tetratricopeptide repeat domain 14 160 IPR011990 GO:0005515(InterPro)
Cone10ag1214 742 FunFam Pentatricopeptide repeat-containing protein At3g58590 369 468 - -
Cone10ag1214 742 Pfam PPR repeat 417 443 IPR002885 -
Cone10ag1214 742 Pfam PPR repeat 287 314 IPR002885 -
Cone10ag1214 742 Pfam PPR repeat 213 240 IPR002885 -
Cone10ag1214 742 Pfam PPR repeat 388 414 IPR002885 -
Cone10ag1214 742 Pfam PPR repeat 315 343 IPR002885 -
Cone10ag1214 742 Pfam PPR repeat family 515 563 IPR002885 -
Cone10ag1214 742 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 332 462 - -
Cone10ag1214 742 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Cone10ag1214 742 Gene3D Tetratricopeptide repeat domain 267 369 IPR011990 GO:0005515(InterPro)
Cone10ag1214 742 Gene3D Tetratricopeptide repeat domain 370 474 IPR011990 GO:0005515(InterPro)
Cone10ag1214 742 Gene3D Tetratricopeptide repeat domain 161 266 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1214 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1214 Cone-Chr10:9041922 Cone7ag0462 Cone-Chr7:2098988 9.43E-128 dispersed
Cone6ag1481 Cone-Chr6:11765754 Cone10ag1214 Cone-Chr10:9041922 4.56E-07 dispersed
Cone10ag1214 Cone-Chr10:9041922 Cone19ag0653 Cone-Chr19:5569211 3.62E-133 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g287 . Blo15g00712 Bda06g00441 Bda08g00947 Bpe07g00674 . . Bma12g00880 . . Cma02g00298 Cma20g00716 Car02g00178 Car20g00615 . . . . . . . . . . . . . . . . . . . . Cone10ag1214 Lsi10g00829 . . . . . . . . . . . . Cmo02g00293 . . . . . . Cpe05g01338 . . . . . . . . . . . . . . . . . Cme11g00154
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013720 1 2 1 1 1 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 0 1 0 0 0 1 0 0 0 20