Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1228 ATGGATTTCTCGTTTATAAAATCATTCAAATATCACGGTTCTTTCAAGAGATTGAGCAATATCTCTGAAGGAGAAGACGCCGCCGGTAATAGTACCGATCATCTCCCCATTCTCACAGATCACGAAGCTGAACAAGATCAACAGTACCACTCAATGAGAGCCGTTGATCAGTCTGACCAGCGTAAGGAGGTGATCGTCAACATCGATACTAAAGAATCTACCAACGGTTCACGAGTGATGGACCAGTCGACGAACAATGGCGGAAAGATTTGGCGGGAATCGAGTATCGAGTTCTGGAACGAAGGTGGGAAGTACAATGGGAATGGTAATGGTAATAGTAATAGTAGTAGTAACGGGAAAGTAGTAGTAGGTCGAGATAGTGAGGGTTTTGATTTTACGCAGCGCGGACAGAGCGCGGAGGATCCTCCTTCGAAGCTGATTGGTCAATTCTTGCATAAACAGAGAGCTTCTGGAGATTTCTCCTTGGACATGGATTTGGAGATGGACGAGCTTCGTCACGATAAGAATCTGGCTCCAGTTACAGAGTCTCCTATGGGTCGTAACTCTAAGGAGTTGAGAGTCTCCTTCCAATCCAACGCTGAAATTTCCAGCAACGAATCAGTAAGAAGGCGTTCCAGGGAGGCCCAACAGCAGCAGTCGCCGCTGCCACCGCCGCCAAATGATCGTCAGAATGATAGCGGTTCTGAGGTTTTGAGGTGCACATCGAATGAGTCGTTTCACAGGAAGTCTAGTTTACTGAGGGCAAAGACCAACAAATCTAGATTGATGGATCCACCCGAGGAGCCAGATCGGAGATCAGGGAGAATGCCAAAATCCGGTCATGTGAGATCTGGTTTTCAGGAGCCTGATCGGAGATCGGGTAGAGTGCCAAAATCGGGGCAACTGAGATCTGGTTTTGTAATGTCCAGGGTTTTAGACGATGAAGATGATGATCCTTTTTTGGATGAGGATTTACCGGATGAGTATAAAAGGGACAAACTTAGTGCTTTGACTCTGCTTGAATGGTTGAGTTTGGTTGTGATAATTGCTGCTTTGGTTTGCACGCTTTCTATTCCACTTTGGAGAAAAAAGAACCTATGGAAGCTTAAGTTATGGAAATGGGAGGTGATGATCTTGGTTTTGATATGTGGAAGATTGGTATCTGGTTGGGGGATTAGGGTGATAGTCTTTTTTATAGAGAGGAACTTTCTCCTGCGGAAAAGAGTTTTGTATTTTGTTTATGGGATTAAAAAGGCTGTTCAAAATTGTCTTTGGTTAGGGCTTGTTCTAATTGCCTGGCATTTGCTCTTTGATAAAAAGGTTGAGAGGGAAACCAAAAGCGATGTACTTAACACTGTCACTAAAATATTGATCTGTCTCTTAGTGGGCACTTTAGTGTGGTTGGTCAAGACTCTAATGGTTAAGGTTTTGGCTTCTTCTTTCCATGTGAGTACATATTTTGATCGGATTCAAGAATCTCTCTTCAATCAATATGTAATAGAAACGCTCTCAGGCCCACCTTTGATTGAAATTCAAAAAAATGAGGAGGATGAAAAGAGGCTTAGAGAGGAAATTCAGAAGTTACAAAATGCAGGGGTTAATATACCCCCAGATCTTAAGGTTTCTGCATCTTCTTCTCCTACAAGTGGAAAAGTTATAGGCAGTGGAAGGTTCCAGAAAAGTCCACGACTAAGTCACATTCTTTCTGCGTCAACTCCAAGGAAGGGAGAAGAAGGTATATCAATTGGGCACTTGCATAGGTTGAGCCCAAAGAACGTCTCTGCTTGGAATATGAAGAGACTAATTAACATTGTCCGATATGGGGCTCTCACCACATTGGATGAGCAGATACAAGGAGCTAGTCAAGAGGATGAGTCTGCTACTCAGATTAGAAGTGAATATCAAGCAAAGGCTGCCGCAAAGAAGATTTTTCTTAATGTGGCTAGAAATGGGTCAAGGTACATCTACATGGAGGACTTGATGCGCTTTTTGAATGAGGATGAGGCTTTGAAGACCATGAGTCTTTTTGAAGGAGCTTCCGAGAGCAAGAAGATATGCAAATCATCCTTGAAGAACTGGGTGGTCAATGCTTTTAGAGAGCGGAGAGCCCTTGCATTAACGCTAAATGATACAAAAACAGCTGTGAATAAACTTCATCGTATGGTGAACGCTCTAGTATGCATTGTGATATTGGTTATTTGGCTGCTAATACTAGGAATTGCCACCACAAAATTTCTCCTCTTGCTAAGCTCTCAACTTGTCCTTGCGGCATTTATATTCGGAAATACCTGCAAGACTGTATTCGAAGCAATCATCTTCTTATTTGTGATGCATCCATTTGACGTTGGTGATAGATGCGAGATTGATGGAGTTCAGATGGTTGTGGAAGAAATGAGCATCTTGACAACTACTTTTCTAAGATATGACAACCAGAAGATAACTTTTCCAAACAGTGTCCTTGCAATGAAGGCTATCAATAACTACTATCGCAGTCCAGACATGGGTGATGCTGTTGAGTTTTGTGTCCATATTTCTACTCCAGCTGACAAAATAGCCATTATGCGGCAGAGAATAGTAAGTTATATTGAGGACAGGAAAGAACACTGGTATCCTGCGCCGATGATTATATTGAAGGATGTCGAAGAATTCAATAGGATAAGAATAGCGGTATGGCTAACACATAGAATGAACCACCAAGACATGGGAGAGAGGTGGGTAAGGAGAAGTCACCTTGTTGAAGAGATGGTTAAGATCTTCAAGGAACTGGATATTCAGTATCGATTATTTCCGCTTGACATTAATGTCCGAACAATGCCTCTTGTGACCTCTACGAGGGTCCCGCCCACTATGAGTTGA 2856 42.72 MDFSFIKSFKYHGSFKRLSNISEGEDAAGNSTDHLPILTDHEAEQDQQYHSMRAVDQSDQRKEVIVNIDTKESTNGSRVMDQSTNNGGKIWRESSIEFWNEGGKYNGNGNGNSNSSSNGKVVVGRDSEGFDFTQRGQSAEDPPSKLIGQFLHKQRASGDFSLDMDLEMDELRHDKNLAPVTESPMGRNSKELRVSFQSNAEISSNESVRRRSREAQQQQSPLPPPPNDRQNDSGSEVLRCTSNESFHRKSSLLRAKTNKSRLMDPPEEPDRRSGRMPKSGHVRSGFQEPDRRSGRVPKSGQLRSGFVMSRVLDDEDDDPFLDEDLPDEYKRDKLSALTLLEWLSLVVIIAALVCTLSIPLWRKKNLWKLKLWKWEVMILVLICGRLVSGWGIRVIVFFIERNFLLRKRVLYFVYGIKKAVQNCLWLGLVLIAWHLLFDKKVERETKSDVLNTVTKILICLLVGTLVWLVKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLIEIQKNEEDEKRLREEIQKLQNAGVNIPPDLKVSASSSPTSGKVIGSGRFQKSPRLSHILSASTPRKGEEGISIGHLHRLSPKNVSAWNMKRLINIVRYGALTTLDEQIQGASQEDESATQIRSEYQAKAAAKKIFLNVARNGSRYIYMEDLMRFLNEDEALKTMSLFEGASESKKICKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMVNALVCIVILVIWLLILGIATTKFLLLLSSQLVLAAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGVQMVVEEMSILTTTFLRYDNQKITFPNSVLAMKAINNYYRSPDMGDAVEFCVHISTPADKIAIMRQRIVSYIEDRKEHWYPAPMIILKDVEEFNRIRIAVWLTHRMNHQDMGERWVRRSHLVEEMVKIFKELDIQYRLFPLDINVRTMPLVTSTRVPPTMS 951
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9229824 9234346 - Conep10aG0126300.1 Cone10ag1228 447026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1228 951 SUPERFAMILY Sm-like ribonucleoproteins 769 828 IPR010920 -
Cone10ag1228 951 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 47 949 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Cone10ag1228 951 FunFam Predicted mechanosensitive ion channel 779 828 - -
Cone10ag1228 951 Coils Coil 511 531 - -
Cone10ag1228 951 MobiDBLite consensus disorder prediction 176 300 - -
Cone10ag1228 951 Gene3D - 779 828 IPR023408 -
Cone10ag1228 951 MobiDBLite consensus disorder prediction 188 205 - -
Cone10ag1228 951 MobiDBLite consensus disorder prediction 260 277 - -
Cone10ag1228 951 MobiDBLite consensus disorder prediction 229 248 - -
Cone10ag1228 951 Pfam Mechanosensitive ion channel, beta-domain 772 829 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cone10ag1228 951 PIRSF Memb_At2g17000 47 951 IPR016688 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1228 Cone-Chr10:9229824 Cone12ag1250 Cone-Chr12:9639328 9.67e-320 dispersed
Cone3ag0976 Cone-Chr3:28412780 Cone10ag1228 Cone-Chr10:9229824 1.40E-212 transposed
Cone3ag0977 Cone-Chr3:28416623 Cone10ag1228 Cone-Chr10:9229824 5.40E-118 transposed
Cone10ag1228 Cone-Chr10:9229824 Cone8ag1305 Cone-Chr8:10642036 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1228 K22048 - csv:101210264 1199.88