Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1234 ATGGAAACTCGGAGCCGGAAGCGGGCGGAGGCCTCCTCAGCAGACCCTTCTGCTTTATCGTCTGGTCCAACCACCCGTTCAAGCAAACGCTCTCGTCTCTCGTCTACTTATTCCTCGCCGTCAAATCCTTCTGCACCTGCTCCCACCATCCCATCAGTCTCGACCCGCTCTCGTTCCTCTCGGTCACAAGAACCATCGCCTGCTCCTGCTACTGTTATGGACTCTACTAACGAGTCTTCTGGGTCTCGCCGCCGTGGGAAGAACTCGGATAAGGACAATTCAGATAAGGGGAAGGAGAAAGAGCATGAAGTAAGGGTAAGGGATAGGGAAAGAGATCCAGACCAGAGCTTAGGACTGAATATGGAAGGTGGTGACGGGGTGGATGAGGATGATAACGATGGTGAGTTGGATGGAGGTCATGGATATTACCACCAGCATTTGACCTCAGCGAGTAGTGCTCTTCAAGGGCTTCTAAGGAAGCTCGGGGCCGGATTAGATGACTTACTACCTTCTTCTGCGATTGCGTCTGCTTCATCTTCACACCAGCGGGGGAGGCTGAAGAAGATCCTTTCTGGTCTGAGAGGGGATGGGGAAGAAGGAAAGCAGGTCGAGGCTTTGACACAGCTTTGTGAGATGCTCTCAATTGGGACGGAAGAGTCGCTAAGTACATTTTCAGTTGATTCCTTTGTTCCTGTCCTTGTGGGGTTGCTTAATCATGAGAGCAATCCTGATATTATGCTCCTTGCGGCTAGGGCGCTGACCCATCTGTGTGATGTGCTACCCTCATCTTGCGCGGCAGTTGTTCATTATGGTGCGGTCTCATGCTTTTGTGCAAGATTACTCACGATAGAGTACATGGACTTGGCTGAGCAGTCTCTGCAAGCTCTGAAGAAGATATCTCAGGAACACCCAACTGCCTGTCTAAGAGCTGGTGCCCTCATGGCTGTGCTTTCTTATCTGGATTTCTTCTCGACAGGGGTTCAGCGAGTAGCATTATCCACTGCTGCAAACATGTGCAAGAAGCTTCCTTCGGATGCAGCTGACTTTGTGATGGAAGCTGTTCCACTGTTGACAAACCTTCTTCAGTATCATGATGCAAAGGTGTTGGAGCATGCTTCGGTATGCTTAACTCGTATTGCTGAGGCATTTGCATCTTCTCCAGATAAATTGGATGAATTATGTAATCATGGACTTGTTACACAAGCTGCCTCACTTGTATCCACAGGCAATTCTGGAGGTGGACAGTCATCCCTAAGCACTCCTACCTACACGGGTCTAATTCGACTTCTTTCCACCTGTGCAAGTGGGTCTCCCTTAGGAGCCAAGACCTTACTTCTTCTTGGGATCAGTGGCATCCTCAAAGATATACTCTCCGGTTCTGGTGTATCCTCTAATTCATCAGTTTCTCCTGCATTAAGTAGGCCACCTGAGCAGATTTTTGAGATAGTCAACATGGCAAATGAGCTCCTGCCCCCACTGCCTCAAGGAACCATCTGCCTTCCTGTCAGCATTAACATATTTGTGAAAGGATCTATTGTCAAGAAGTCGTCTGCTAGCAGCTCTGGGAAACAAGAAGAGGGATATGGAATTGCTCCGGAGGTTTCAGCTCGTGAGAAACTATTAAATGAGCAGCCTGAGCTACTTCACCAATTTGGGATGGATCTTCTTCCTGTTCTAATTCAAATCTATGGTTCTAGTGTGAATAGTCCTGTTCGCTACAAATGTCTCTCGGTAATTGGAAAGCTGATGTACTTCAGCTCTGCGGAGATGATCCAGTCTTTGTTAACTACGACAAACTTATCAAGTTTTCTAGCTGGTATTTTAGCATGGAAAGATCCAAATGTGCTAATTCCATCTCTCCAAATTGCGGAGATTCTTATGGAAAAGCTTCCTGGAACTTTCTCCAAGATGTTTCTCAGAGAGGGTGTTGTTCATTCTGTAGACCAACTTATTTTGGCTAGTGACAAGAACATTACTGCCTCTTCTACTGAAAAGGATAATGACTCTGTATCTGGAATGTCATCACGCTCTAGACGTTACAGACGTCGCAGTGGTCCATCAAATTCAGATGGAAACTCACTGGAAGAATCTAAGAATCCTGCATGTCCAAATGTAGGTTCACCTCCAAGCTTAGTGGATGTTCCATCTGCTAGTTCTAGTCTGCGGATGACAGTAAGTGCTTCTGCCAAAGCTTTTAAAGAGAAGTTCTTCCCTTCAAATTGTGGAGCTATTGAAATTGGAGTTACAGATGACCTTTTACATTTGAAGAATCTTTGCACACGGTTGAATACTGGTGTTGATGAGCAAAGGACTAAATCAAAAGGAAAATCAAAAGTTTCTGGGGCTCATCTGGTTGATATTTCAACCAGTAAGGAAGAGTATTTAAGTGGGACAATATATGAGATGCTAGTTGAACTAGGAAAAGGGGATGGTGTGTCCACTTTTGAGTTTATTGGCAGTGGTGTTATTGCTGCTTTGCTTGATTACTTTTCTTGTGGATACTTCTCTAAGGAAAGAATCTCAGAAGTTAACCTGCCAAAGCTTCGCCAACAAGCTCTTAAAAGATTCAAGTCATTTGTTTCTGTGGCACTTCCTTCTAGTACGGCTGAGGGCACCATTACTCCTATGACTATTCTAGTTCAGAAGCTTCAGAATGCCTTGTCCTCCTTGGAGCGTTTCCCTGTTGTTCTGAGCCATTCATCTAGGTCTGCTACTGGAGGTGCACGCCTTTCGTCTGGACTAAGTGCATTATCTCATCCTTTTAAGTTGCGTCTTTGTCGAGCCCAAGGAGAGAAAGCTCTTCGAGATTATTCATCAAATATTGTGTTAATTGATCCTTTGGCAAGTTTAGCAGCTGTTGAAGAGTTTCTTTGGCCTCGTATTCAGCGAGGTGAATCTGTCCAAAAGCCCTTAGCCTCTGTTGGAAACTCAGAGTCTGGAACCACACCCACTGGAGCTGGCGCTTCATCTCCATCCTCTTCAACTCCTGCTTCTACCACTCGTCGTCACTCTACTAGGTCCAGATCATCTGTGAATATAGGAGATGCGGCCAAGAAGGAACTATCACAAGAGAAGAGCACAAGCTCGTCAAAGGGTAAAGGTAAAGCTGTTTTGAAGGCCACTCAGGTGGAGACCAAAGGACCACAAACTAGGAATGCTGCTCGTAGAAGAGCATCTATAGACAAGGATGCTCAAGCAAAACCTTCAAGCGAGGACACTACATCTGAGGATGAAGAACTAGATATCTCTCCTGTTGAAATTGATGAAGCATTGATTATTGAAGACGATGACATCTATGACGATGAAGATGAAGAGCATGTCGAAGTGCTAAGAGATGAGTCCCTACCTGTTTGTACGCCTGACAAGGTACATGATGTAGAATTGGGAGATGCATCTGAGGATCGCAATATCCCTCCTACAAGTGAAGGCCAGAATAATGTAGCTTCGGGCTCCAGTAGCGGAGTTGGTGCAGTTAGGGCATCCGATTCTGCTGATCATAGGAGTGGAAACTCTCATAATTCTAGGATGTCATTTGCTGCGGCTGCTATGGCTGGTCTTGGATATGCTAATGCCAGAGCCTTAAGGGGAGGTCAAGATCGTCATGGGCGTTTTCTATTTGGTAGTGCTGGTAATTCTACACGGCTGATCTTTTCTTCTGGTGGAAAGAAACTTGATAGGCGTTTGACCATCTATCAGGCTATTCAACGGCAGCTTGTTCTAGATGAGGATGATGATGAGAGGTATGCTGGTAGTGATTTCATATCTAGTGATGGAAGCAGGATGTGGAGTGATATATATACTATAACATACCAGAGGGCTGACAATCCAGCTGACAGGGCTGCTGCCCTTGAGGGTTCAAGCTCTGCTTTATCAAAACCTACCAAGTCTGCATCTGTGTCCAACTGTGATTCCGATTCTCAGCTTCGTCGAGTTTCACTTCTAGATAGTATCTTGCAAGGGGAACTTCCTTGCGATTTGGATAAATCAAGTCCTACTTATAATATATTAGCATTGCTACGCGTCCTAGAGGGTTTGAACCAGCTTGCACCACGTTTGAGGGTCCAAATAATGTCTGACCTATTTTCAGAGGGGAAAATATCAAGCCTAGATGAGATGAAAACAACTGGTGTAAGGGTCCCTTCAGAGGAATTTATCAACGACAAGCTTACTCCAAAATTAGCTCGACAAATTCAAGATGCCCTTGCATTGTGCAGTGGGAGTATCCCATTGTGGTGTTATCAGTTGACAAAAGCATGCCCATTTTTGTTTCCTTTTGAGACCCGACGTCAATATTTCTATTCAACAGCATTTGGGTTGTCACGTGCATTACATCGTCTTCAGCAACAGCAGGGGGCTGATGGTGTTGGATCAGCAAATGAGAGAGAGTTGAGAGTTGGGAGATTGCAGCGTCAGAAAGTTCGGGTTTCTCGCAATCGCATTTTGGATTCTGCTGCCAAAGTTATGGAGATGTATTCCAGCCAAAAGGCGGTTCTTGAAGTAGAGTACTTTGGTGAGGTGGGAACTGGGTTGGGTCCTACCCTTGAATTCTACACACTTTTAAGTCATGAGCTACAGAAAGTTGGACTTAAGATGTGGAGAACCACAGAGGAGCCTTTTATGGAAACTGAAGGGGATGAAGAAAGAGATGCAATCAATGGTGACCTTGTCCAAGCTCCTCTTGGGTTGTTTCCTCGCCCTTGGCCTCCCAATGCTGATGCTTCCAATAGTAGCCAATTTTCTAAAGTCATCGACTATTTTCGATTGGTTGGGCGAGTGATGGCCAAAGCTCTTCAGGATGGAAGGCTGCTGGACTTGCCTTTTTCGACATCATTGTACAAGCTCATGCTTGGTCAAGATCTTGATTTGCATGATATTCTCTCTTTTGATGCTGAGCTTGGGAAGACTTTGCAAGATTTGCATGTTCTTGCATGTAGAAAACAGTATCTAGAATCAATGGGTGCTGAGACCCATGATACTGTCACTGATCTGTGCTTCCGTGGGACTCCAATTGAAGATCTCTGCTTGGATTTCACACTTCCTGGTTATCCAGACTACATTTTGAAATCAGGAGATGAAATTGTTAACATCAATAACTTGGAGGAGTACATATCCTTGGTAGTTGATGCAACTATCAAAACTGGGATCATACGACAAATAGACGCATTTAGAGCAGGGTTCAATCAGGTTTTTGACATCATTTCCTTACAAATATTCACTCCTGATGAGTTGGACTATTTGCTATGTGGTCGCAGAGAGTTATGGGAGGCTGAGTCACTCGTTGATCACATAAAATTTGATCATGGATACACTGCAAAGAGTCCTGCAATAATCAATTTACTTGAGATCATGGGAAAATTCACTCCAGAGCAGCAGCGAGCTTTCTGCCAGTTTGTTACTGGTGCACCTAGGCTCCCTCCTGGTGGCCTTGCCGTGCTGAATCCAAAACTGACTATAGTGAGAAAGCACTCTTCATCAACAAGTAATGCAGCAACAAACGTCAACGGGGCTTCTGAATTAGCTGATGATGACCTGCCTAGTGTCATGACATGTGCTAATTACCTCAAGCTTCCTCCCTATTCGACCAAGGATATCATGTACAAGAAACTACTCTATGCAATCAATGAAGGGCAGGGATCCTTTGATCTATCATGA 5652 45.06 METRSRKRAEASSADPSALSSGPTTRSSKRSRLSSTYSSPSNPSAPAPTIPSVSTRSRSSRSQEPSPAPATVMDSTNESSGSRRRGKNSDKDNSDKGKEKEHEVRVRDRERDPDQSLGLNMEGGDGVDEDDNDGELDGGHGYYHQHLTSASSALQGLLRKLGAGLDDLLPSSAIASASSSHQRGRLKKILSGLRGDGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSCFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLVSTGNSGGGQSSLSTPTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSGVSSNSSVSPALSRPPEQIFEIVNMANELLPPLPQGTICLPVSINIFVKGSIVKKSSASSSGKQEEGYGIAPEVSAREKLLNEQPELLHQFGMDLLPVLIQIYGSSVNSPVRYKCLSVIGKLMYFSSAEMIQSLLTTTNLSSFLAGILAWKDPNVLIPSLQIAEILMEKLPGTFSKMFLREGVVHSVDQLILASDKNITASSTEKDNDSVSGMSSRSRRYRRRSGPSNSDGNSLEESKNPACPNVGSPPSLVDVPSASSSLRMTVSASAKAFKEKFFPSNCGAIEIGVTDDLLHLKNLCTRLNTGVDEQRTKSKGKSKVSGAHLVDISTSKEEYLSGTIYEMLVELGKGDGVSTFEFIGSGVIAALLDYFSCGYFSKERISEVNLPKLRQQALKRFKSFVSVALPSSTAEGTITPMTILVQKLQNALSSLERFPVVLSHSSRSATGGARLSSGLSALSHPFKLRLCRAQGEKALRDYSSNIVLIDPLASLAAVEEFLWPRIQRGESVQKPLASVGNSESGTTPTGAGASSPSSSTPASTTRRHSTRSRSSVNIGDAAKKELSQEKSTSSSKGKGKAVLKATQVETKGPQTRNAARRRASIDKDAQAKPSSEDTTSEDEELDISPVEIDEALIIEDDDIYDDEDEEHVEVLRDESLPVCTPDKVHDVELGDASEDRNIPPTSEGQNNVASGSSSGVGAVRASDSADHRSGNSHNSRMSFAAAAMAGLGYANARALRGGQDRHGRFLFGSAGNSTRLIFSSGGKKLDRRLTIYQAIQRQLVLDEDDDERYAGSDFISSDGSRMWSDIYTITYQRADNPADRAAALEGSSSALSKPTKSASVSNCDSDSQLRRVSLLDSILQGELPCDLDKSSPTYNILALLRVLEGLNQLAPRLRVQIMSDLFSEGKISSLDEMKTTGVRVPSEEFINDKLTPKLARQIQDALALCSGSIPLWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALHRLQQQQGADGVGSANERELRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHELQKVGLKMWRTTEEPFMETEGDEERDAINGDLVQAPLGLFPRPWPPNADASNSSQFSKVIDYFRLVGRVMAKALQDGRLLDLPFSTSLYKLMLGQDLDLHDILSFDAELGKTLQDLHVLACRKQYLESMGAETHDTVTDLCFRGTPIEDLCLDFTLPGYPDYILKSGDEIVNINNLEEYISLVVDATIKTGIIRQIDAFRAGFNQVFDIISLQIFTPDELDYLLCGRRELWEAESLVDHIKFDHGYTAKSPAIINLLEIMGKFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSSTSNAATNVNGASELADDDLPSVMTCANYLKLPPYSTKDIMYKKLLYAINEGQGSFDLS 1883
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9320498 9333188 + Conep10aG0126900.1 Cone10ag1234 447032

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1234 1883 SMART hect_3 1482 1883 IPR000569 GO:0004842(InterPro)
Cone10ag1234 1883 Gene3D Hect, E3 ligase catalytic domain 1754 1881 - -
Cone10ag1234 1883 MobiDBLite consensus disorder prediction 967 1093 - -
Cone10ag1234 1883 MobiDBLite consensus disorder prediction 1287 1303 - -
Cone10ag1234 1883 MobiDBLite consensus disorder prediction 1055 1073 - -
Cone10ag1234 1883 Gene3D Hect, E3 ligase catalytic domains 1412 1645 - -
Cone10ag1234 1883 FunFam E3 ubiquitin-protein ligase UPL3 1412 1644 - -
Cone10ag1234 1883 MobiDBLite consensus disorder prediction 1284 1303 - -
Cone10ag1234 1883 SUPERFAMILY Hect, E3 ligase catalytic domain 1464 1876 IPR035983 GO:0004842(InterPro)
Cone10ag1234 1883 MobiDBLite consensus disorder prediction 969 1012 - -
Cone10ag1234 1883 Pfam HECT-domain (ubiquitin-transferase) 1571 1883 IPR000569 GO:0004842(InterPro)
Cone10ag1234 1883 MobiDBLite consensus disorder prediction 80 116 - -
Cone10ag1234 1883 Gene3D - 174 493 IPR011989 -
Cone10ag1234 1883 MobiDBLite consensus disorder prediction 1137 1158 - -
Cone10ag1234 1883 MobiDBLite consensus disorder prediction 686 704 - -
Cone10ag1234 1883 MobiDBLite consensus disorder prediction 14 79 - -
Cone10ag1234 1883 FunFam HECT ubiquitin protein ligase family protein KAK 179 493 - -
Cone10ag1234 1883 MobiDBLite consensus disorder prediction 661 716 - -
Cone10ag1234 1883 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 142 1883 IPR045322 GO:0000209(PANTHER)|GO:0006511(InterPro)|GO:0043161(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)
Cone10ag1234 1883 SMART arm_5 343 381 IPR000225 GO:0005515(InterPro)
Cone10ag1234 1883 SMART arm_5 217 258 IPR000225 GO:0005515(InterPro)
Cone10ag1234 1883 SMART arm_5 300 340 IPR000225 GO:0005515(InterPro)
Cone10ag1234 1883 MobiDBLite consensus disorder prediction 1130 1173 - -
Cone10ag1234 1883 MobiDBLite consensus disorder prediction 1 141 - -
Cone10ag1234 1883 MobiDBLite consensus disorder prediction 1074 1093 - -
Cone10ag1234 1883 SUPERFAMILY ARM repeat 185 654 IPR016024 -
Cone10ag1234 1883 CDD HECTc 1471 1878 IPR000569 GO:0004842(InterPro)
Cone10ag1234 1883 ProSiteProfiles HECT domain profile. 1495 1883 IPR000569 GO:0004842(InterPro)
Cone10ag1234 1883 FunFam Putative E3 ubiquitin-protein ligase HECTD1 1752 1882 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1234 K10590 - - mdm:103413255 2667.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1234 Cone-Chr10:9320498 Cone3ag0959 Cone-Chr3:5368314 0 dispersed
Cone10ag1234 Cone-Chr10:9320498 Cone19ag1278 Cone-Chr19:8697172 3.40e-311 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g154 . . . . . Bpe12g00120 . . . . Cma02g00257 Cma20g00754 . Car20g00655 . . . . . . . . . . . . . . . . . . . . Cone10ag1234 . . Chy11g00258 . Blo04g00566 Blo13g00505 Bda15g01035 . Bpe15g00815 . Bma03g00607 Bma08g00752 Sed01g0197 Cmo02g00253 Cmo20g00750 . . . . Cpe16g00315 Cpe05g01375 Bhi10g01854 Tan05g1142 Cmetu11g0032 . Hepe08g0290 . . Cla02g01165 Cam02g1242 Cec02g1251 Cco02g1292 Clacu02g1224 Cmu02g1192 Cre02g1504 . Csa02g01389 . Cme11g00383
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003449 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 2 2 2 1 1 3 4 2 48