Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1246 ATGCAAGCTTCAAAGCAATCCAGACGCTCTTCAATGCCCAAAAAACTATGTTATCAGCCTATGAATCAGCTTGAGTTCTTATGGTTCCCTCCGTTTCAAAATCAGCATCTATGCTCCGATAGTCCCATTGCAACTTTCGACCGAAAATACTGCACTCTAGAATCATCCTCCACAAACGGAGAATATTCCATTAACTACCGGAATACTTCGTCAAGTCTCCCCTTCTCTCCCAGTGGGAGCTTCATATCACATCAATGCTCGGATCATAGTAATAAAAGTAATAATAATAATAATAATAATAATACATATGGCTCTCCTATTAGTAGCTCCTGCATAACAGACGAAGTCAATGACTTGCGCTACAAGTTACGGGAACTGGAAACTGTAATGTTAGGTCCAGACCCTGATTTTCTCGAAGACTATCATGACAGTAATGAGAGCTCTAAACAAATTACGGAAGCAGTCTCTAAAGGGGACTTGAAACAGGTCCTCATTGCTTGTGCCCAAGCAGTATCCAATAATGATCTATCGATATCACAATGGCTGATCAACGAATTACGAATATTGGTCTCAGTTTCCGGAGAGCCAATCCAACGGTTGGGAGCGTACATGCTAGAAGGACTAGTGGCTAGGATTTCGTCGTCCGGTAGTTGCATCTACAAATCGCTAAGATGCAAAGAACCGGCAAGTAGCTCAGATCTACTTTCTTACATGCACATCCTTTACGAGGTATGTCCGTATTTCAAATTCGGTTACATGTCAGCCAATGGCGCGATAGCCGAAGCCATGAAGGATGAAAACCGGGTCCACATCATTGATTTCCAAATTGGTCTAGGGAGTCAGTGGATCACTCTGATCCAAGCCTTTGCGGCCCGGCCTGGTGGGCCCCCGCATATCCGTATAACGGGGATCAATGATTCAATGTCAGCTTACGCTCGTGGAGGTGGACTCAACCTCATTGGAAAACGGCTCATGAAACTGGCCAGGTCTTTTAAAGTTCCGTTCGAGTTCCATGCGGCTGCTATGTCTGGTTGCGAGGTTGAGCCTAAAGACCTTGGGGTTCAACCCGGTGATGCCCTTGCGGTTAATTTTGCATTTATGCTTCATCACATGCCAGATGAAAGTGTAACCACCATGAACCATAGGGACCGGCTCTTACGTTTGGTCAAAGGGTTGGCTCCAAAGGTGGTTACTCTTGTTGAGCAAGAGTCAAATACAAATACGGCTGCATTTTATTCGCGGTTTTTGGAGACAATGGATTACTACAAGGCAATGTTTGAGTCGATTGATGTGACTCTTCCTAGGGAGCATAGGGAGAGGATCAATGTGGAGCAACATTGTCTTGCAAGGGAAGTGGTTAACATAATAGCTTGTGAAGGGGGGGAGAGAGTGGAGCGGCATGAGCTTTTAGGGAAGTGGAGGTCAAGATTTAGTATGGCTGGGTTTAGTCCGTACCCGTTAAGCTCGTTGGTGAATGCTACGATCAAGAGGTTGTTGCAGAATTATAGCGATAAGTATCGGCTTGAAGAGAGGGAAGGGGCTCTTTATCTTGGATGGATGAATAGGGATTTGGTTACTTCTTGTGCTTGGAAGTGA 1596 45.05 MQASKQSRRSSMPKKLCYQPMNQLEFLWFPPFQNQHLCSDSPIATFDRKYCTLESSSTNGEYSINYRNTSSSLPFSPSGSFISHQCSDHSNKSNNNNNNNNTYGSPISSSCITDEVNDLRYKLRELETVMLGPDPDFLEDYHDSNESSKQITEAVSKGDLKQVLIACAQAVSNNDLSISQWLINELRILVSVSGEPIQRLGAYMLEGLVARISSSGSCIYKSLRCKEPASSSDLLSYMHILYEVCPYFKFGYMSANGAIAEAMKDENRVHIIDFQIGLGSQWITLIQAFAARPGGPPHIRITGINDSMSAYARGGGLNLIGKRLMKLARSFKVPFEFHAAAMSGCEVEPKDLGVQPGDALAVNFAFMLHHMPDESVTTMNHRDRLLRLVKGLAPKVVTLVEQESNTNTAAFYSRFLETMDYYKAMFESIDVTLPREHRERINVEQHCLAREVVNIIACEGGERVERHELLGKWRSRFSMAGFSPYPLSSLVNATIKRLLQNYSDKYRLEEREGALYLGWMNRDLVTSCAWK 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9461020 9463486 + Conep10aG0128100.1 Cone10ag1246 447044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1246 531 ProSiteProfiles GRAS family profile. 151 531 IPR005202 -
Cone10ag1246 531 MobiDBLite consensus disorder prediction 86 107 - -
Cone10ag1246 531 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 143 530 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cone10ag1246 531 Pfam GRAS domain family 160 531 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1246 Cone-Chr10:9461020 Cone14ag1207 Cone-Chr14:9818414 1.79E-188 dispersed
Cone10ag1246 Cone-Chr10:9461020 Cone3ag1294 Cone-Chr3:31806914 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44248 PF00201 UDPGT 3.60E-24 CL0113 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1246 K27748 - vvi:100261403 755.362