Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1254 ATGGAGGGGGGTTCGGAGGAGGAGAAGAAGAAGCGTGCAGAGGGAGAGAACAAGGCCAAGCGGAAAATGAAGACCGCTTCACAGTTGGAGATACTGGAGAACACCTTTGCTGTGGAAACTTACCCATCAGAATCATTAAGAGCGGAGTTATCAGTCAAACTCGGCCTTTCTGATCGCCAACTGCAAATGTGGTTCTGTCACCGGAGGTTGAAGGACCGGAAAGCAACTCCGGTGAAGAAGCCGGTGAAGGATTCAGAGGATGTGGTCATTGGAGATATTGGTAATGAGCATGTAGTAAGGTCTGGTTCGGGTTTGAGTCCATATGGTCATGGAGGAGTGGACTTGGGCCGGGTTGGTCCGAGGTCCGGGGTGGCTATTGCGAGGATTGGTAGTGACATGCCACCGACAAAGAGGTACTATGGAGCCCAACAATCAACAGTGGAGGTTCGAGCGATAGCTTTTATAGAGGCGCAATTGGGAGAGCCTTTGAGGGAAGATGGACCTATTCTTGGGTTGGAGTTTGATTCACTGCCACCTGATGCTTTTGGAGCTCCTATAGGAGCAGGGGGACGGGAGAAGAAATCGGGATTGCCTTTCGAGGCAACTATATATGAGCGACCTGAGGCTAAACACATCAAGGTTTCTGGGAGGTCTCTCCATGAATACCAGTTTCTTCCAGAGCAGCCAACTGACAGAACTGACAATTATGAAAGAACTGCCCCTTCTTATCATTGTGGCTCACCTGTTAATGGTCCAAATTCAAGGGCATCAGTATCTTCTTTTCCAGATGACTATGAAAATATTTCTCGAAAGAGCCTCTTTCTGAACACTGCCGTGGATGCTCAGTATTCTACTCACCCAATTACTCAATTGGAGAATCCATTTATGACTTCTGACTGGAGGGTCTCCCATGACGAGGATGCCTTACGGATGGAGAGGAAACAGAAGAATGAGGAGGCAAGAATTGCTAGGGAAGTTGAAGCCCATGAGAAAAGGATACGAAAAGAGCTCGAGAAACAAGATATTCTCAGGCGAAAGAGGGAGGAGCAAGTAAGGAAAGAAATGGAAAGACAGGATCGTGAGAGGCGCAAGGAAGAAGAAAGACTATTGCGTGAAAAACAGAAAGAGGAAGAGAGATACATAAGGGAGCAAAGGCGTGAAATGGAGAGGAGGGAAAAGTTCTTGCTCAAGGAGTCAATTAGAGCTGAGAAAATGAGGCAAAAAGAAGAGATGCGTAGAGAAAAGGAATCTGCCCGGATAAAAGCTGCCAATGAAAGGGCTCATGCTCGCAGAATAGCTAAAGAATCTTCGGAACTCGTTGATGATGAACGCTTGGAACTCATGGAGTTAGCTGCTTCAACCAAGGAGTTAACCTCGATTCTGTCTCTGGATTATGAAACTTTGCAAAATCTTGAGCTCTATAGAGATATGCAGACGGTGTTCCCACCTAAAGCTGTGGAAATGAAAAGGCCATTTGATCTTCAACCATGGACTGATTCGGAAGAGAACATAGGAAATCTTCTTATGGTCTGGAGGTTCTTAATTACGTTTGCAGACGTTCTTGGACTTTGGCCTTTTACTCTGGACGAGTTTATACAAGCTTGTCATGATTATGATCCAAGGTTGCTTGGTGAGATTCATATTTCCCTTCTTAGATTGATCATAAAGGATATTGAAGATGTGGCTAGAACACCTGCTAATGGGCTCGGAGCTAATCAGAACAACGCTGCAAATGTTGGAGGTGGTCATCCTCAGATTGTCCAAGGGGCATATGCTTGGGGTTTCAACATACATAGTTGGCAGTGCTACTTGAATCTCTTGACATGGCCTGAGATATTGCGGCAGTTCGCTCTATCAGCAGGGTTTGGACCTCAACTGAAAAGAAAGAGTACTCGATTGGTATATCTACATGATGAAAATGAGGGTACTAATGGTGAAGATATAATATGTAATTTACGTAATGGAGCAGCTGCAGAAAATGCTGTTGCTATAATGAATGAAAGAGGACTTTCAAATCCAAACAGGTCAAGGCACCGCTTGACGATTGGAACAGTCAAATTTGCAGCTTTTCATGTTCTTTCACTTGAAGGAAATAAAGGCCTGACTATATTGGAGAAATCTGGCCTTCGAGATCTTACAACAAGCAAGACACCAGAGGCCTCTGTTGCTGCTGCTTTATCTAGAGATACAAAGCTCTTCGAAAGAACAGCTCCTTCTACGTATTGCGTAAGATCTTCCTATAGAAAAGATGCAGCTGATTCTGAGGCAATACTTTCTGCTGCAAGAGAAAGAATTCGCATATTTAAAAGTGGATTTTTGGATGAAGTATATGCAGAGGATGGTGAAAGAGATGAAGATTCTGAAAGCGATGGAGCAGAGGATCCTGAAGTGGATGATTTGGGTACTGAAATTAAGAAAGAGACTAAATCTCAAGGTCATAATTCTGATGCAAACAATACTGTGGGACTTGGAAAGGAAATTAATGATGCCATGGAAACTTCTCAAGCCGATATGGGAAATGGAGGTCAAGATTTATCTACAATGGATTCTGAAGGAAGCTTAAAAACAAAGGAAACTGGTGCGACAATCAATCAAGCTTGTGATTTTATTGGAAATCTTGATCTAGAAGATAAAGATATTGATGAAAGCAAACCCGGTGAACCCTGGGTTCAAGGACTTGTTGAAGGAGAGTACTCTGACATTACAGTTGAAGAGCGTCTTAACGCACTTTGTGCATTGATTGGCGTTGTAATGGAAGGAAATTCAATTCGGATCATTCTTGAGGAACGTTTGGAGGCAGCTAAAGCATTAAAGAAGCGAATGTGGTCAGAGGCTCAACTTGATAAACGTCGCAGTAAAGAAGATTATTGTTCTTTCCCCGCAAACAAAAATGAAGCTAACTTTACACACCTGTCAGGAGAGGGTAGGCAAAGCCCATCTCATGACATTTACAGCAAAAACAACGAGACATCCTTAGAACCTGACCAGAAAGATTGGCTTGGTAATTTAAAGAGTGAAAACAATAATCATATTAATCTGCCTTCTGAAGGGAACCTTCGGATGCAAGATTACCCTACTACTGCCAATGATAACTTGCAACTTCAAGAATCTGGACTTGCCTCTGAAAAGTCACACTCACAGTTAAAATCTTACATTGGTCACAAAGCAGAAGAAATGTATGTGTATAGATCCTTACCACTTGGTCAAGATCGAAGACATAATAGATACTGGCAATTTGTTACATCTTCTAGACATGATCCTGGCTGTGGAAGAATCTTTGTTGAGTTACACAATGGGTTTTGGAGGATTATTGATACCGAAGAGGGTTTCAATGCTCTTTTAGCTTCTCTGGATGTACGTGGGGTTAGGGAATCTCATTTGAACACCATATTACAAAAGATAGAATCTACCTTTAAGGAATCTGTTCGGAGAAAGTCACTGCATGTCAAAATAGGGAGTCAGATTGAAAACTCTTCCAAATCTAACACCGACAAAATGGCCCAAAAATGTGATTCTGGTGCCGGAACTGATAGTCCTTGTAGTGCCGTATGTGTGTCTGATTCTGACATGTCAGAGACATCAACATCTTTCACAATTGAACTTGGGAGGAATGAAAAGGAGAAAAAGGATGCCTTGAAGAGATACCAAGACTTTGAAAAGTGGATGTGGAAAGAGTGCTTTAATTCTCATATATTATCTGCTATGAGATATGGGAAGAAGAGGGCCATTCAATTGCTCAATATTTGTAATTATTGTCGGTGTATTTATTCGTTCGAGGATAATCATTGCCCTTCTTGCCACAGTAACTATAATTCTTTGGAAAGTGAAGTCAATTTTTCCGAACATGTTGCTCTATGCCATGAAAAATTAAGTGGTTCATTTACTTCTCCTCTTAGGATCAGATTACTGAAGATTTTATTAGCTTTGGTTGAGGTTTCTGTTCCAATGGAGGCTCTTCAATCATTCTGGACTGAAGGCATTCGCAAATCATGGGGTATGAAATTGTGCTCTTCGTCATCAACTGAAGAACTACTTCAGATTCTGACATCATTGGAGAGTGCAATACGGAGAGAGAATTTATCACCAAAATACGAGACCACCATGGAATTGTTGGGTCGCTCCAGTGCATCACCCTGCATGGCTAATGACACTTTCCTTCCTGAGAAGGCCCCTATTCTTCCATGGATTCCATTAACGACAGCTGCCATTGCTCTGAGGCTTATGGAGTTAGACACATCTATCTTTTACACCCAGCAGCAGAAATTGGAGTCTAAAGACCATGGATCAGCTAACCTTGCAACATTTCCATCAAAGTTTTCCATTGCAAAATATTCTCAAGACTACAAAGCAACTGCAACTCCAAACAAGCATCATACAGAAGCAAACTGGGCTAATCCTCCATATGGGCCTTCCAGCTCAGGCCGTGGACGAGGTGGGGCACAAGGAAAAGCTGGTACCCGTCCTCATGGTGGAAGGTCAAAGAAAACCAATTTTGGTCCTGTTCTTGCATGGAAAGCTGGAAAATCACGTGGAAAACCAAAACGAGGCCGTGGTCGTAGGAGCATCAGAAAAAGGCCAAGGCTGGCAAAGAAGGAAGAAGATCAAAGTGCACAGAAGAATGATGTCTACAGTAAATCACCATTAAGCCTTGTTCAGGACTGGAATGAAGATCATACTATGATGTTTTCTAACCAAGGCATGGAAAATGATATGGTAGATGCATATGCAGATGGATTTGATGGTAAATCAGATGAGAATTTTCTTGATGGTAAATCAAATGTTACTGACCATTCGATTAATGATGACGATGATGATGACGACGACAATGATGACGGCGATGATGACGACGATGAAGCCGAAGAAGAAGAAAGGCGAGGATCGGGTGATGAATATGAGATGGAGGATGGATATGCAGATCCGTTTGACGGTAAATCAGATGACACTATTCTTGAAGAAAGCTACTGTAACAATGTTAATAATGGGGATGAAGATGATTTTGACTATGTTAACAATGAGGAGGAAGAAGATGATGATAGTGGAGAACAATAA 5049 42.38 MEGGSEEEKKKRAEGENKAKRKMKTASQLEILENTFAVETYPSESLRAELSVKLGLSDRQLQMWFCHRRLKDRKATPVKKPVKDSEDVVIGDIGNEHVVRSGSGLSPYGHGGVDLGRVGPRSGVAIARIGSDMPPTKRYYGAQQSTVEVRAIAFIEAQLGEPLREDGPILGLEFDSLPPDAFGAPIGAGGREKKSGLPFEATIYERPEAKHIKVSGRSLHEYQFLPEQPTDRTDNYERTAPSYHCGSPVNGPNSRASVSSFPDDYENISRKSLFLNTAVDAQYSTHPITQLENPFMTSDWRVSHDEDALRMERKQKNEEARIAREVEAHEKRIRKELEKQDILRRKREEQVRKEMERQDRERRKEEERLLREKQKEEERYIREQRREMERREKFLLKESIRAEKMRQKEEMRREKESARIKAANERAHARRIAKESSELVDDERLELMELAASTKELTSILSLDYETLQNLELYRDMQTVFPPKAVEMKRPFDLQPWTDSEENIGNLLMVWRFLITFADVLGLWPFTLDEFIQACHDYDPRLLGEIHISLLRLIIKDIEDVARTPANGLGANQNNAANVGGGHPQIVQGAYAWGFNIHSWQCYLNLLTWPEILRQFALSAGFGPQLKRKSTRLVYLHDENEGTNGEDIICNLRNGAAAENAVAIMNERGLSNPNRSRHRLTIGTVKFAAFHVLSLEGNKGLTILEKSGLRDLTTSKTPEASVAAALSRDTKLFERTAPSTYCVRSSYRKDAADSEAILSAARERIRIFKSGFLDEVYAEDGERDEDSESDGAEDPEVDDLGTEIKKETKSQGHNSDANNTVGLGKEINDAMETSQADMGNGGQDLSTMDSEGSLKTKETGATINQACDFIGNLDLEDKDIDESKPGEPWVQGLVEGEYSDITVEERLNALCALIGVVMEGNSIRIILEERLEAAKALKKRMWSEAQLDKRRSKEDYCSFPANKNEANFTHLSGEGRQSPSHDIYSKNNETSLEPDQKDWLGNLKSENNNHINLPSEGNLRMQDYPTTANDNLQLQESGLASEKSHSQLKSYIGHKAEEMYVYRSLPLGQDRRHNRYWQFVTSSRHDPGCGRIFVELHNGFWRIIDTEEGFNALLASLDVRGVRESHLNTILQKIESTFKESVRRKSLHVKIGSQIENSSKSNTDKMAQKCDSGAGTDSPCSAVCVSDSDMSETSTSFTIELGRNEKEKKDALKRYQDFEKWMWKECFNSHILSAMRYGKKRAIQLLNICNYCRCIYSFEDNHCPSCHSNYNSLESEVNFSEHVALCHEKLSGSFTSPLRIRLLKILLALVEVSVPMEALQSFWTEGIRKSWGMKLCSSSSTEELLQILTSLESAIRRENLSPKYETTMELLGRSSASPCMANDTFLPEKAPILPWIPLTTAAIALRLMELDTSIFYTQQQKLESKDHGSANLATFPSKFSIAKYSQDYKATATPNKHHTEANWANPPYGPSSSGRGRGGAQGKAGTRPHGGRSKKTNFGPVLAWKAGKSRGKPKRGRGRRSIRKRPRLAKKEEDQSAQKNDVYSKSPLSLVQDWNEDHTMMFSNQGMENDMVDAYADGFDGKSDENFLDGKSNVTDHSINDDDDDDDDNDDGDDDDDEAEEEERRGSGDEYEMEDGYADPFDGKSDDTILEESYCNNVNNGDEDDFDYVNNEEEEDDDSGEQ 1682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9597807 9608248 - Conep10aG0128900.1 Cone10ag1254 447052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1254 1682 MobiDBLite consensus disorder prediction 834 857 - -
Cone10ag1254 1682 MobiDBLite consensus disorder prediction 1665 1682 - -
Cone10ag1254 1682 Pfam DDT domain 502 557 IPR018501 -
Cone10ag1254 1682 CDD homeodomain 18 74 IPR001356 GO:0003677(InterPro)
Cone10ag1254 1682 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 884 928 IPR028942 -
Cone10ag1254 1682 MobiDBLite consensus disorder prediction 1 24 - -
Cone10ag1254 1682 MobiDBLite consensus disorder prediction 1508 1526 - -
Cone10ag1254 1682 SMART testlast3 501 560 IPR018501 -
Cone10ag1254 1682 MobiDBLite consensus disorder prediction 1650 1664 - -
Cone10ag1254 1682 MobiDBLite consensus disorder prediction 1001 1024 - -
Cone10ag1254 1682 ProSiteProfiles DDT domain profile. 501 560 IPR018501 -
Cone10ag1254 1682 MobiDBLite consensus disorder prediction 1599 1628 - -
Cone10ag1254 1682 MobiDBLite consensus disorder prediction 348 368 - -
Cone10ag1254 1682 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1 1630 IPR044977 GO:0006357(InterPro)
Cone10ag1254 1682 SMART HOX_1 17 79 IPR001356 GO:0003677(InterPro)
Cone10ag1254 1682 MobiDBLite consensus disorder prediction 1575 1682 - -
Cone10ag1254 1682 MobiDBLite consensus disorder prediction 1450 1547 - -
Cone10ag1254 1682 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 1488 1507 IPR001711 GO:0004435(InterPro)|GO:0006629(InterPro)|GO:0007165(InterPro)|GO:0035556(InterPro)
Cone10ag1254 1682 Pfam Homeodomain 18 74 IPR001356 GO:0003677(InterPro)
Cone10ag1254 1682 Gene3D - 2 77 - -
Cone10ag1254 1682 MobiDBLite consensus disorder prediction 1575 1598 - -
Cone10ag1254 1682 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1062 1134 IPR028941 -
Cone10ag1254 1682 MobiDBLite consensus disorder prediction 780 797 - -
Cone10ag1254 1682 MobiDBLite consensus disorder prediction 1450 1469 - -
Cone10ag1254 1682 SUPERFAMILY Homeodomain-like 15 74 IPR009057 -
Cone10ag1254 1682 Coils Coil 326 346 - -
Cone10ag1254 1682 Coils Coil 348 391 - -
Cone10ag1254 1682 MobiDBLite consensus disorder prediction 1629 1649 - -
Cone10ag1254 1682 ProSiteProfiles 'Homeobox' domain profile. 15 75 IPR001356 GO:0003677(InterPro)
Cone10ag1254 1682 MobiDBLite consensus disorder prediction 968 1024 - -
Cone10ag1254 1682 Coils Coil 397 428 - -
Cone10ag1254 1682 Pfam HB1, ASXL, restriction endonuclease HTH domain 683 745 IPR007759 GO:0006355(InterPro)
Cone10ag1254 1682 MobiDBLite consensus disorder prediction 968 990 - -
Cone10ag1254 1682 MobiDBLite consensus disorder prediction 780 799 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1254 Cone-Chr10:9597807 Cone5ag1688 Cone-Chr5:12010010 0 dispersed
Cone1ag0181 Cone-Chr1:1028847 Cone10ag1254 Cone-Chr10:9597807 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44249 PF00939 Na_sulph_symp 4.50E-129 CL0182 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1254 - - - 0.0