Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1255 ATGTTTCTTCTTCATTCTCTCTCTAACACACCCGCTCTCTCTCTCTCTAGAAAAAACCAAAAAACAATGCTGCTTCCTCCTCCACTGTTTCTGTTCTTCCTCCTCCTCTACTTTTCCGCCATTGTTGTAATAACCTCTCTTAACCAGGAAGGTCTTTACCTTCAGCAAGTCAGACTCGGTCTTTCCGACCCAACTAACTCACTCTCCTCCTGGAATGCGAGAGATGACACTCCCTGTAACTGGTCCGGCGTTTCCTGCGACTCGGCGACTCAGCGAGTCATCTCAGTCGACCTTTCCAACTCGCAACTCGGTGGCCCTTTTCCAACCTTCTTTTGCCGCCTACCTTCTCTCTCCTCCCTCTCTCTCTCCAACAACATCATCAATTCCACCCTCCCAGCTGATATCTCCACGTGTCATAATCTCCTGGTTCTTGATCTTTCTCAGAATCTCGTTGTGGGTCCCATCCCTCAGACCTTGTCCCGAATCTCTACTCTCCGGCGACTAGACCTTTCCGGGAACAACTTCACCGGCGAGATTCCAGCGAGTTTCGGTGAGTTTCAAAGACTTGAGTATCTTAATCTTGTTGAGAATCTTCTGAATGGAACAATCCCTACTTCTCTTGGAAACATTTCGAGCCTGAAAGAGCTTCAACTCGCTTACAACCCGTTGAGTTCGAGTCGTATTCCGAGTGAGCTCGGCAACTTGATGAACCTCGAGTTTCTCTGGCTCAGTGATTGTAATCTGATAGGGCAAATCCCAATGAGTCTAGGCAACTTGACTCGGCTCAAGAACCTCGACTTATCCATGAACAAAATCAGTGGGTCGATACCGAGTTCACTCACTCAGATGAAAAGTCTAGTTCAAGTCGAGCTCTTCCACAACTCACTATCCGGTGAGTTTCCACCATTAATGTCGAACTTAACCTCGTTGCGCCGATTTGACTCGTCCATGAACGAGTTAACAGGAATGATTTCAGAAGATTTATGCGCTTTACCTCTCGAATCCTTAAATCTATACGAGAATCGATTTGAAGGGGTATTGCCGGGAAGCATAGCTGACTCCCCAAACTTATACGGGCTCAAATTATTCAACAACAAACTCAGCGGGCCATTACCAAGTCAACTCGGCCGTAACTCACCGTTACAGTGGCTCGACTTTTCATATAACGGATTCTCCGGAGAAATCCCAGAATTCTTATGCTCGAGAGGAGAACTTCAAGGCCTTGTGTTGATGCACAATTCATTCTCCGGGAAAATCCCTGAAAGTCTTGGAAAATGCAGTTCTTTGATCCGGGTTCGGTTGAGAAACAATGAGTTTTCAGGTACAGTGCCCGAAGAATTCTGGGGCTTACCTAGACTCTCTGTACTTGATCTTGTCGAAAATTCCTTCTCTGGATCTATATCTAGTGAGCTACCTCGGACGATTCAAAATCTGAAGAAGCTAAACGAGCTTTATTTAGCGGACAATAAGTTGTCTGGAAGAATCCCGAATGAAATTGGAAGCTTAACGGTGCTTAGTTATCTTGATCTTTCTAGTAATCGACTTAGTGGAAACATCCCACTTGAATTACAGAATTTGAAGCTGAATTTCTTGAATTTGTCGAGCAATCTTTTCTCTGGTCAAATCCCTCCACTTTATGCTAAAGAGAGTTATAAAGTCAGCTTTTTGGACAACCCAGGTTTGTGTGGAGACATTCCGGGTCTTTGTCCTAGCCTCGGCAAAACAGAAAACAACTTTTACTTTTGGATACTTTGGTCCATTTTCATACTTGCGGGAGTTGTTTTGTTTGCTGGGCTTGTTTGGTTTTATTGGAAGTATAGGAATTATAAGAAGAACAAGAAAGAAAACTCTGCCTTGTCTAAATGGAGATCATTCCATAAAGTTGACTTCAGTGAAAGTGAAATCATAGGATGCCTGAAAGAAGATAATGTTATAGGAGAAGGAGCTTCTGGAAAAGTTTATAAAGTTGTTCTAACTAATGGTGATACAGTGGCAGTGAAAAAACTATGGGAAGTTGCTAAAAATGAAAGTAGTTTTAATTCGGAGAAAGATGGTTTTGAGGCGGAGGTAGAGACGCTAGGGAAGATCCGGCATAAGAACATTGTGAGGTTATGGTGTTGCTGCAATGCTGGGGATAACTGTAAGCTCTTGGTTTATGAATATATGCCCAACGGAAGCTTAGGTGATTTGTTACATGGCGGCAAATCAGTGCTGTTGGATTGGCCCGTGAGGTATAAGATAGCTTTTGATGCTGCGGAGGGGCTTTCTTATTTGCATCATGACTGTGTTCCTCCTGTCGTTCATAGAGATATCAAATCAAACAATATTTTGTTAGATGCGGACTTTAGAGCTAGAGTTTCGGATTTCGGGGTTGCTAAGTTTGTGAAAGGGAGTAATGGGGCTGAATCCATGTCTGTTATTGCCGGTTCTTGTGGCTATATTGCTCCAGAATATGCTTATACTCTTAGGGTGAATGAAAAGAGTGACATCTACAGCCTTGGAGTGGTCATGCTAGAACTGGTGACAGGCCGGCGACCAAATGATCCCGAGTTCGGTTGGAAAGATTTGGTAAAGTGGGTCCACACAACCTTGGACCAGAAAGGACCGGACCATGTAATAGATCCAAAACTCGACTCGAGCTACAAGGAACAGATAGTTAGAGTCCTAAACATAGCTTTGATTTGCACTAGCTCGCTTTCTATGAACCGGCCCTCAATGAGAACCGTGGTGAAATTGTTGCAAGAGGTGACTGGCTCGGACATCAAGTCTATGGCCGTTAAGAAAGACAGTCAGCTTTCTCTGTGTTACCATGAAGATTTCTCTGACAAAGGTGGCTTGGTTTAG 2844 44.02 MFLLHSLSNTPALSLSRKNQKTMLLPPPLFLFFLLLYFSAIVVITSLNQEGLYLQQVRLGLSDPTNSLSSWNARDDTPCNWSGVSCDSATQRVISVDLSNSQLGGPFPTFFCRLPSLSSLSLSNNIINSTLPADISTCHNLLVLDLSQNLVVGPIPQTLSRISTLRRLDLSGNNFTGEIPASFGEFQRLEYLNLVENLLNGTIPTSLGNISSLKELQLAYNPLSSSRIPSELGNLMNLEFLWLSDCNLIGQIPMSLGNLTRLKNLDLSMNKISGSIPSSLTQMKSLVQVELFHNSLSGEFPPLMSNLTSLRRFDSSMNELTGMISEDLCALPLESLNLYENRFEGVLPGSIADSPNLYGLKLFNNKLSGPLPSQLGRNSPLQWLDFSYNGFSGEIPEFLCSRGELQGLVLMHNSFSGKIPESLGKCSSLIRVRLRNNEFSGTVPEEFWGLPRLSVLDLVENSFSGSISSELPRTIQNLKKLNELYLADNKLSGRIPNEIGSLTVLSYLDLSSNRLSGNIPLELQNLKLNFLNLSSNLFSGQIPPLYAKESYKVSFLDNPGLCGDIPGLCPSLGKTENNFYFWILWSIFILAGVVLFAGLVWFYWKYRNYKKNKKENSALSKWRSFHKVDFSESEIIGCLKEDNVIGEGASGKVYKVVLTNGDTVAVKKLWEVAKNESSFNSEKDGFEAEVETLGKIRHKNIVRLWCCCNAGDNCKLLVYEYMPNGSLGDLLHGGKSVLLDWPVRYKIAFDAAEGLSYLHHDCVPPVVHRDIKSNNILLDADFRARVSDFGVAKFVKGSNGAESMSVIAGSCGYIAPEYAYTLRVNEKSDIYSLGVVMLELVTGRRPNDPEFGWKDLVKWVHTTLDQKGPDHVIDPKLDSSYKEQIVRVLNIALICTSSLSMNRPSMRTVVKLLQEVTGSDIKSMAVKKDSQLSLCYHEDFSDKGGLV 947
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9613647 9617597 + Conep10aG0129000.1 Cone10ag1255 447053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1255 947 ProSitePatterns Protein kinases ATP-binding region signature. 645 668 IPR017441 GO:0005524(InterPro)
Cone10ag1255 947 SUPERFAMILY Protein kinase-like (PK-like) 633 913 IPR011009 -
Cone10ag1255 947 FunFam Leucine-rich receptor-like protein kinase family protein 228 326 - -
Cone10ag1255 947 Pfam Leucine Rich Repeat 237 259 IPR001611 GO:0005515(InterPro)
Cone10ag1255 947 Pfam Leucine Rich Repeat 505 526 IPR001611 GO:0005515(InterPro)
Cone10ag1255 947 Pfam Leucine Rich Repeat 480 502 IPR001611 GO:0005515(InterPro)
Cone10ag1255 947 Pfam Leucine Rich Repeat 261 282 IPR001611 GO:0005515(InterPro)
Cone10ag1255 947 Pfam Leucine Rich Repeat 381 400 IPR001611 GO:0005515(InterPro)
Cone10ag1255 947 ProSiteProfiles Protein kinase domain profile. 639 917 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag1255 947 Pfam Leucine rich repeat 164 223 IPR001611 GO:0005515(InterPro)
Cone10ag1255 947 Pfam Leucine rich repeat 405 462 IPR001611 GO:0005515(InterPro)
Cone10ag1255 947 SMART serkin_6 639 917 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag1255 947 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 47 210 - -
Cone10ag1255 947 SMART LRR_typ_2 259 283 IPR003591 -
Cone10ag1255 947 SMART LRR_typ_2 450 477 IPR003591 -
Cone10ag1255 947 SMART LRR_typ_2 210 235 IPR003591 -
Cone10ag1255 947 SMART LRR_typ_2 114 138 IPR003591 -
Cone10ag1255 947 SMART LRR_typ_2 478 502 IPR003591 -
Cone10ag1255 947 Pfam Protein kinase domain 641 848 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag1255 947 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 722 931 - -
Cone10ag1255 947 Gene3D Ribonuclease Inhibitor 303 578 IPR032675 -
Cone10ag1255 947 Pfam Leucine rich repeat N-terminal domain 47 87 IPR013210 -
Cone10ag1255 947 FunFam Receptor-like protein kinase HSL1 622 721 - -
Cone10ag1255 947 Gene3D Ribonuclease Inhibitor 203 302 IPR032675 -
Cone10ag1255 947 Gene3D Phosphorylase Kinase; domain 1 621 721 - -
Cone10ag1255 947 ProSitePatterns Serine/Threonine protein kinases active-site signature. 766 778 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone10ag1255 947 Gene3D Transferase(Phosphotransferase) domain 1 722 939 - -
Cone10ag1255 947 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 467 917 IPR050647 -
Cone10ag1255 947 Gene3D Ribonuclease Inhibitor 47 202 IPR032675 -
Cone10ag1255 947 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 330 572 - -
Cone10ag1255 947 SUPERFAMILY L domain-like 331 573 - -
Cone10ag1255 947 SUPERFAMILY L domain-like 70 328 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1255 Cone-Chr10:9613647 Cone9ag0992 Cone-Chr9:5100982 3.89E-173 dispersed
Cone10ag1255 Cone-Chr10:9613647 Cone3ag1311 Cone-Chr3:32033223 8.07E-284 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81846 PF03107 C1_2 9.60E-07 CL0006 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1255 - - - 0.0