Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1257 ATGGCTGATTCTCAAGAAGGGTTTGTTTCAAATGGTTTTGTTCAAACCCCAATACGTGGATCCAATCCTCCTGTTGTAAAGAAGAAGAGAAACCTCCCTGGAGCTCCAGATCCAGAAGCAGAAGTGATTGCCTTGTCCCCAAAAACTCTTATGGCGACAAATAGATTCTTATGTGAAATATGTGGGAAAGGTTTCCAAAGGGATCAAAACCTACAACTCCATAGACGTGGACATAATCTTCCATGGAAGCTGAAGCAAAGAACAAGTAAAGAGATTAAAAAGCGCGTTTATGTTTGCCCGGAAAAAATATGCGTCCATCACCACCCTTCTCGGGCCCTAGGCGACCTCACCGGCATTAAAAAGCACTTTTGTAGGAAGCACGGTGAGAAGAAGTGGAAGTGTGAGAAGTGTTCAAAAAGATATGCCGTTCAGTCAGATTGGAAAGCTCATTCTAAAACTTGTGGCACTAGAGAGTACAAATGTGACTGTGGTACTCTATTTTCACGGAGAGATAGCTTCATCACTCATAGGGGATTTTGTGATGCTTTAGCTGAAGAAACTGCTAGGGTCAATGCAGCAAGAAGCATAAGCAATATCAATTACAACCACTTCATAATGGGATCATCAGCTTCTCCTCTGGAGGCAAATATGGCAAAACACTTCTCTTCTGTTCTCAAACCAATCCCGACGTCACTCAATGAAGCAACGCCGACAATGTCGGCGGGCCTCCATCTATGGATGGGTCAAGGATCTCAAGCCCATCTATCAATTATGACTCAAAATAACAGCATCATTCTCCAAGATATTATTCGTCATCATCATGACAACAATGAAGATCCTCATCAAGTACTAGTCGGTAATACTTCTCATGACTATCATCAGTTGAATTGGGCTTTTGGATCTTCAGGTAATGTTGAACAAGAGCTAACAAGCACTAATTCACTACCATTGAGCCATGTTAAGGATGTTTCTGGAAGTACTACGCATGATCAGCTTGTTAGTGTTCCTTCTTTATACAGCAACCAATTACAGTTACAACAATGCCATCAAAACCCTGATTATGCAAATATGTCAGCCACTGCGTTGTTACAAAAAGCAACAGAGAATGGGTCAACTACTACTACTTCTCCTACTTCAGCTGACCCATCTATATTTTTAGGGAATTTTGGTTTGAAGTGCAACAATATTAGCACTTCTACTACTACTCCTCCTACTTCTGTTGATCAAGACGGGAACAAGTTTAATGGATTATATGGTTCAATTAACCCACTATTGCAAATTAGTAGGCTTGGAAATGATGATGTGCAAGATTCGACTGGGAATTTGTCACAGATTTTCCCGGCTGCAAAACGAAGGAAAACACAGGGCGATCAAGATCAAAGCATGGCAGGGGGACAAACTAGGGACTTTCTAGGTGTTGCTGTTCAAACCATTTGCCACCCTTCATCAATCCATGAATGGATTTGA 1467 41.51 MADSQEGFVSNGFVQTPIRGSNPPVVKKKRNLPGAPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIKKRVYVCPEKICVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRGFCDALAEETARVNAARSISNINYNHFIMGSSASPLEANMAKHFSSVLKPIPTSLNEATPTMSAGLHLWMGQGSQAHLSIMTQNNSIILQDIIRHHHDNNEDPHQVLVGNTSHDYHQLNWAFGSSGNVEQELTSTNSLPLSHVKDVSGSTTHDQLVSVPSLYSNQLQLQQCHQNPDYANMSATALLQKATENGSTTTTSPTSADPSIFLGNFGLKCNNISTSTTTPPTSVDQDGNKFNGLYGSINPLLQISRLGNDDVQDSTGNLSQIFPAAKRRKTQGDQDQSMAGGQTRDFLGVAVQTICHPSSIHEWI 488
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 9626976 9629475 - Conep10aG0129200.1 Cone10ag1257 447055
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1257 488 SUPERFAMILY beta-beta-alpha zinc fingers 55 152 IPR036236 -
Cone10ag1257 488 FunFam protein indeterminate-domain 5, chloroplastic-like 110 189 - -
Cone10ag1257 488 MobiDBLite consensus disorder prediction 1 33 - -
Cone10ag1257 488 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 131 155 - -
Cone10ag1257 488 Gene3D Classic Zinc Finger 52 79 - -
Cone10ag1257 488 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Cone10ag1257 488 SMART c2h2final6 132 152 IPR013087 -
Cone10ag1257 488 SMART c2h2final6 56 78 IPR013087 -
Cone10ag1257 488 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 93 127 - -
Cone10ag1257 488 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 475 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone10ag1257 488 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
Cone10ag1257 488 Gene3D Classic Zinc Finger 90 179 - -
Cone10ag1257 488 Pfam Zinc finger, C2H2 type 56 78 IPR013087 -
Cone10ag1257 488 MobiDBLite consensus disorder prediction 1 18 - -
Cone10ag1257 488 FunFam protein indeterminate-domain 12-like 35 103 - -
Cone10ag1257 488 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 158 195 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1257 Cone-Chr10:9626976 Cone17ag0574 Cone-Chr17:2964295 1.34E-104 dispersed
Cone10ag1257 Cone-Chr10:9626976 Cone3ag1314 Cone-Chr3:32052872 1.42E-307 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44251 PF03000 NPH3 6.20E-108 No_clan Cone TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1257 K25870 - vvi:100252370 568.54