Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone10ag1257 | ATGGCTGATTCTCAAGAAGGGTTTGTTTCAAATGGTTTTGTTCAAACCCCAATACGTGGATCCAATCCTCCTGTTGTAAAGAAGAAGAGAAACCTCCCTGGAGCTCCAGATCCAGAAGCAGAAGTGATTGCCTTGTCCCCAAAAACTCTTATGGCGACAAATAGATTCTTATGTGAAATATGTGGGAAAGGTTTCCAAAGGGATCAAAACCTACAACTCCATAGACGTGGACATAATCTTCCATGGAAGCTGAAGCAAAGAACAAGTAAAGAGATTAAAAAGCGCGTTTATGTTTGCCCGGAAAAAATATGCGTCCATCACCACCCTTCTCGGGCCCTAGGCGACCTCACCGGCATTAAAAAGCACTTTTGTAGGAAGCACGGTGAGAAGAAGTGGAAGTGTGAGAAGTGTTCAAAAAGATATGCCGTTCAGTCAGATTGGAAAGCTCATTCTAAAACTTGTGGCACTAGAGAGTACAAATGTGACTGTGGTACTCTATTTTCACGGAGAGATAGCTTCATCACTCATAGGGGATTTTGTGATGCTTTAGCTGAAGAAACTGCTAGGGTCAATGCAGCAAGAAGCATAAGCAATATCAATTACAACCACTTCATAATGGGATCATCAGCTTCTCCTCTGGAGGCAAATATGGCAAAACACTTCTCTTCTGTTCTCAAACCAATCCCGACGTCACTCAATGAAGCAACGCCGACAATGTCGGCGGGCCTCCATCTATGGATGGGTCAAGGATCTCAAGCCCATCTATCAATTATGACTCAAAATAACAGCATCATTCTCCAAGATATTATTCGTCATCATCATGACAACAATGAAGATCCTCATCAAGTACTAGTCGGTAATACTTCTCATGACTATCATCAGTTGAATTGGGCTTTTGGATCTTCAGGTAATGTTGAACAAGAGCTAACAAGCACTAATTCACTACCATTGAGCCATGTTAAGGATGTTTCTGGAAGTACTACGCATGATCAGCTTGTTAGTGTTCCTTCTTTATACAGCAACCAATTACAGTTACAACAATGCCATCAAAACCCTGATTATGCAAATATGTCAGCCACTGCGTTGTTACAAAAAGCAACAGAGAATGGGTCAACTACTACTACTTCTCCTACTTCAGCTGACCCATCTATATTTTTAGGGAATTTTGGTTTGAAGTGCAACAATATTAGCACTTCTACTACTACTCCTCCTACTTCTGTTGATCAAGACGGGAACAAGTTTAATGGATTATATGGTTCAATTAACCCACTATTGCAAATTAGTAGGCTTGGAAATGATGATGTGCAAGATTCGACTGGGAATTTGTCACAGATTTTCCCGGCTGCAAAACGAAGGAAAACACAGGGCGATCAAGATCAAAGCATGGCAGGGGGACAAACTAGGGACTTTCTAGGTGTTGCTGTTCAAACCATTTGCCACCCTTCATCAATCCATGAATGGATTTGA | 1467 | 41.51 | MADSQEGFVSNGFVQTPIRGSNPPVVKKKRNLPGAPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIKKRVYVCPEKICVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRGFCDALAEETARVNAARSISNINYNHFIMGSSASPLEANMAKHFSSVLKPIPTSLNEATPTMSAGLHLWMGQGSQAHLSIMTQNNSIILQDIIRHHHDNNEDPHQVLVGNTSHDYHQLNWAFGSSGNVEQELTSTNSLPLSHVKDVSGSTTHDQLVSVPSLYSNQLQLQQCHQNPDYANMSATALLQKATENGSTTTTSPTSADPSIFLGNFGLKCNNISTSTTTPPTSVDQDGNKFNGLYGSINPLLQISRLGNDDVQDSTGNLSQIFPAAKRRKTQGDQDQSMAGGQTRDFLGVAVQTICHPSSIHEWI | 488 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 9626976 | 9629475 | - | Conep10aG0129200.1 | Cone10ag1257 | 447055 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone10ag1257 | 488 | SUPERFAMILY | beta-beta-alpha zinc fingers | 55 | 152 | IPR036236 | - | |
Cone10ag1257 | 488 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 110 | 189 | - | - | |
Cone10ag1257 | 488 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Cone10ag1257 | 488 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 131 | 155 | - | - | |
Cone10ag1257 | 488 | Gene3D | Classic Zinc Finger | 52 | 79 | - | - | |
Cone10ag1257 | 488 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 58 | 78 | IPR013087 | - | |
Cone10ag1257 | 488 | SMART | c2h2final6 | 132 | 152 | IPR013087 | - | |
Cone10ag1257 | 488 | SMART | c2h2final6 | 56 | 78 | IPR013087 | - | |
Cone10ag1257 | 488 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 93 | 127 | - | - | |
Cone10ag1257 | 488 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 21 | 475 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cone10ag1257 | 488 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 56 | 78 | IPR013087 | - | |
Cone10ag1257 | 488 | Gene3D | Classic Zinc Finger | 90 | 179 | - | - | |
Cone10ag1257 | 488 | Pfam | Zinc finger, C2H2 type | 56 | 78 | IPR013087 | - | |
Cone10ag1257 | 488 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Cone10ag1257 | 488 | FunFam | protein indeterminate-domain 12-like | 35 | 103 | - | - | |
Cone10ag1257 | 488 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 158 | 195 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone10ag1257 | Cone-Chr10:9626976 | Cone17ag0574 | Cone-Chr17:2964295 | 1.34E-104 | dispersed | |
Cone10ag1257 | Cone-Chr10:9626976 | Cone3ag1314 | Cone-Chr3:32052872 | 1.42E-307 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44251 | PF03000 | NPH3 | 6.20E-108 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone10ag1257 | K25870 | - | vvi:100252370 | 568.54 |