Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1260 ATGGAGCCCTTGACAGAATTCAAGACTGAGGAACAGACTAGGAAGTGTACGAAGAGCAAATGTGAATCTACATCTCACAAGCTCTTGAAGGAAAAAGCCAAGAACCGAGTCACTGATCTTCAAGGCATGTTCACTAATCTCCAATCAGCAAGGAAGGAGAGTAGGGCCCATGACATTGCAGTCTTAGAGGAGCAAATGCACCAAGTTCTCCGAGAATGGAATTCCGAGCTTAATGAACCGTCCCCCGCTTCTTCGTTAGTTGGTGATACTCTTGGATCATTCTCGAACGATCTAGCCCGACTATTGGAGCAGATAGAGGAGGAAGATGATGCCACAAGTGCATTAGCTGAACCAAAGGCCGAGACTAATCTTTCTGCACATCAAAATGGCGGTTTTGTAAATCATGAGCTCCAACAGAATGCTTTTGATGGATATAATGAATGCAAAGATTTTGATTCAAGTCAACACAATATTCCGGTTTTTAACAACTCGGATCTGGCTACAGAGTCGCCCTCTCATCACCTCGCTATACATCAACACCTCGAGCACACTCCAATCACTCATATGGAAGGTCGGCTGTTTTATCCGGACCAAGAATTCGACTATGAACTTTTCATTGGCCCCAATGACAATACTGAACCTTGTGGGCAGAATATCATGTCTAACATTCTTCCGAATATTTCACCCCCACCATCTGCTTTCTTGGGCCCAAAATGTGCTCTGTGGGACTGTTTCAGGCCCGCTCAGGGCTCCGAATGGTGCCGGGATTACTGCAGTAGTGTTCATTCTGTTCTCGCTTTAAATGAGGGCCTTGATGGAATGACTCCGATTCTACGACCTGGTGGGACAGGCTTGAAGGATGGCCCACTTTTTACCGCACTTAATGCGAAGACTGAGGCAAAGAGTGTTGGAATTCCAACGTGTGAAGGGGCTGCTACTATGAAATGTCCATGGAATGCTCCAGAGCTGTTTGATATCTCCTTCATAGAGGGAGAAACACTCCGGGAATGGCTATTTTTCGACCGACCAAGAAGGGCATTTGAAAGCGGGAACAGGAAGCAAAGGTCATTACCAGACTACAAAGGACGAGGTTGGCACGAGTCAAGGAAGCAAGTCGTGAAAGAGTTCAAGGGAAGGAAGCGGTCCTACTACATGGACCCACAACCTTCAACCTCTGTAGAATGGCATTTGTATGAATACGAGATCGAAAATAACGAGACCTTTGCTTTGTATAGATTGGAGCTCAAGGGAGTCGATTTGAGTAAGAAGAGTCCAAAAGGGAAATTGGGTATGGTGGGAGCGGACCCGCTTGTTGATTTGCAGAAGAAGATGGGAAGGCTTACTGCTGAGGTTGCTGATGAAAAGGGTGGATCCAGTTCGTGA 1383 46.35 MEPLTEFKTEEQTRKCTKSKCESTSHKLLKEKAKNRVTDLQGMFTNLQSARKESRAHDIAVLEEQMHQVLREWNSELNEPSPASSLVGDTLGSFSNDLARLLEQIEEEDDATSALAEPKAETNLSAHQNGGFVNHELQQNAFDGYNECKDFDSSQHNIPVFNNSDLATESPSHHLAIHQHLEHTPITHMEGRLFYPDQEFDYELFIGPNDNTEPCGQNIMSNILPNISPPPSAFLGPKCALWDCFRPAQGSEWCRDYCSSVHSVLALNEGLDGMTPILRPGGTGLKDGPLFTALNAKTEAKSVGIPTCEGAATMKCPWNAPELFDISFIEGETLREWLFFDRPRRAFESGNRKQRSLPDYKGRGWHESRKQVVKEFKGRKRSYYMDPQPSTSVEWHLYEYEIENNETFALYRLELKGVDLSKKSPKGKLGMVGADPLVDLQKKMGRLTAEVADEKGGSSS 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9687871 9691939 + Conep10aG0129500.1 Cone10ag1260 447058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1260 460 PANTHER TRANSCRIPTION FACTOR VOZ1 15 455 IPR039277 GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0043565(PANTHER)|GO:0045893(PANTHER)|GO:0048578(PANTHER)|GO:0048578(InterPro)
Cone10ag1260 460 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1260 Cone-Chr10:9687871 Cone5ag1682 Cone-Chr5:11969071 1.23E-167 dispersed
Cone1ag0187 Cone-Chr1:1066913 Cone10ag1260 Cone-Chr10:9687871 3.12E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44252 PF05916 Sld5 4.40E-22 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1260 - - - 0.0