Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1268 ATGAATAACGCCTACAAGGCCTTCAAAGCATGTGTTCCAGTTGCATGGAGCCCTAATCTTTATATAACCTTAGTAAGGGGCATTCCCGGAACAAGGAGGCTTCATAGGCGTACCTTAGAGGCACTGCGACTTGGCAAATGCAACCGAACTGTTATGCGTTGGAACACTCCCACCGTTAGGGGAATGCTGCAACAGGTGAAGAGATTAGTGGTGGTCGAGACAGATGAAATGTTTAAAGCGCGTAAAGAAAAGGAGCTGAACCATAGAGCTCTTCGCCCCCCATTAATTATAAATCACCTTCCTGCTCAGGGAAGTAGACCAAGTGGTTCTTCGTGA 336 47.02 MNNAYKAFKACVPVAWSPNLYITLVRGIPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMLQQVKRLVVVETDEMFKARKEKELNHRALRPPLIINHLPAQGSRPSGSS 111
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9743490 9744810 - Conep10aG0130300.1 Cone10ag1268 447066

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1268 111 FunFam 50S ribosomal protein L30 18 99 - -
Cone10ag1268 111 SUPERFAMILY Ribosomal protein L30p/L7e 19 73 IPR036919 -
Cone10ag1268 111 CDD Ribosomal_L30 20 73 IPR005996 GO:0003735(InterPro)|GO:0006412(InterPro)|GO:0015934(InterPro)
Cone10ag1268 111 Hamap Large ribosomal subunit protein uL30 [rpmD]. 17 74 IPR005996 GO:0003735(InterPro)|GO:0006412(InterPro)|GO:0015934(InterPro)
Cone10ag1268 111 Gene3D - 18 78 IPR036919 -
Cone10ag1268 111 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN L30 3 100 IPR005996 GO:0003735(InterPro)|GO:0005739(PANTHER)|GO:0006412(InterPro)|GO:0015934(InterPro)
Cone10ag1268 111 NCBIfam 50S ribosomal protein L30 20 73 IPR005996 GO:0003735(InterPro)|GO:0006412(InterPro)|GO:0015934(InterPro)
Cone10ag1268 111 Pfam Ribosomal protein L30p/L7e 21 70 IPR016082 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1268 K02907 - - cit:102614536 188.734
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g947 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone10ag1268 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007137 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 0 34