Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1283 ATGAATAATTTTAAAGCACAGCCTTCTGCCAGGCTTCTTGGAACCTTATCCATGGAGTTCTTCTTTAGAATGGTTGTTGTACTGGTCATTTGCTTGTGTACGCCAGTAGGCACAATGGGGGCAACTGGAAATGCGAGCAGTAGTACTGGTTTATCTAAGCCTAGTGTGGTAAATATCGGGGCTCTGTATACTTTTGATTCGGTTATTGGAAGGTCAGCGAAACTGGCTATTTTAGCCGCCATTGATGATGTCAATGCTAATGCAAGCATTCTTCCTCAGACTAAACTGAATGTCATCTTGCATGATACAAATTGCAGCGGGTTTCTTGGAACGGTAGAAGGTTTGCAGCTAGTAGAAGACGAAGTGGTAGCTGCAATCGGGCCACAATCATCAGGAATAGCCCATATCATATCCCATGTTGTTACGGAACTCCATATCCCTCTCCTCTCCTTCGCCACGGATCCCACTCTTGCAGCACTTCAATACCCGTATTTCCTCCGAACAACACAGAGCGACTATTTTCAAATGAATGCAATAACCGATCTAGTTGCATATTATGGTTGGAGGGAAGTCATAGCCATCTTTGTAGATGATGATTATGGAAGAAACGGGATATCAGCATTAGGCGATGCGTTGGCAAAAAAACGCGCGAAAATCTCTTACAAAGCCGCTTTAACTCCCGGAGCTTCTAGAAGCAGAATCAACGACTTGTTGGTCGAAGTCAATCTTATGGAATCTCGGGTTTATGTTGTACATGTCAATCCTGACTCAGGTTTGACTATATTCTCTGTCGCCAAGGCTCTCGAGATGATGGGTAATGGTTATGTTTGGATTGCAACCGATTGGCTTCCTTCTTTTCTTGATTCTTTAGATACGACAAATTCGGATATAATGAATTCGATCCAAGGGGTTGTCACTCTTCGTCATTATACTCGGGATAGCAACCTCAAGAAAAATTTCGGGTTGAAATGGAAGGGATTAAAATATAATAGGAGTATGAACTTCAATTCTTATGCACTCTACGCTTATGACTCCGTATGGTTAGTGGCCCATGCTCTCGACCTTTTCTTCAAGGAAGGCGGGAACATCTCTTTCTCGAATGACCCGAAACTACACGATGCGAACAGAAGCATGCTTCATTTGACGTCGCTCCGTATTTTCGACCGTGGGCCCCAACTTCTCCAGACGATTTTGAGGATGAACTTCCTGGGTTTAAGCGGCCGGATTGCGTTTGATTCAGAGAAAAATTTAGTAAATCCGGCTTATGATGTTTTGAACGTTGGTGGGACAGGTATGCTTAGAATCGGTTATTGGTCAAATTATTCTGGTCTTTCTAAGGTTACTCCAGAGATTCTATACACAAAGCCTCCTAATACTTCTTCTAGTAATCAAAATCTTTATAGTGTCATATGGCCAGGAGAAACCACAACAATTCCTAGGGGATGGGTTTTTCCAAACAATGGAAAGCCATTAAGGATTGGGGTCCCGAACCGAGTTAGTTACAAAGAATATGTTTCTAAAGACAAGAACCCACCTGGGGTTAGAGGGTTTTGTATTGATGTGTTTGAAGCTGCCTTGAGTCTATTGCCTTATGCTGTCCCACACACGTATATATTATATGGAAATGGAAAGGACAATCCCGAGTATAGCAATCTTGTTTATGCTGTTTCACAAAATAGGTTTGATGCAGCTGTTGGGGATGTAACGATTACTACAAATCGGACAAAGACTGTGGATTTCACACAACCTTACGTCGAATCGGGTCTTGTTGTAGTAGTTGCAGTCAAAGAGCAGAAGTCAAGCCCATGGACTTTTCTCCGGCCCTTTACTATTCAGATGTGGTGTGTCACAAGTGTCTTCTTTCTTTTCGTCGGAGCGGTTGTTTGGATTCTCGAGCACCGGACTAATTCAGAGTTCCGTGGCCCACCTAGGCAACAACTCATAACAATATTCTGGTTTAGTCTCTCTACAATGTTTTTCTCCCACAGAGAGAATACAGTCAGCACTCTAGGGCGACTGGTTCTGATTATATGGCTATTTGTAGTGTTGATTATCAATTCAAGCTATACGGCTAGTTTGACTTCGATCCTGACCGTTCAACGGCTCGAGTCAAAGATTGAAGGGATCGAGAGCTTGATTTCGAGCTCTGAACCGATTGGAGTTCAAGTAGGATCATTTGCATTTAAGTATTTGATTAATGAGCTCAATATAGCGGAATCAAGGATTGTAAAATTGAAAGGGCAAGAAGAGTATGAGAGTGCTCTTTTGCGTGGGCCCACAGGCGGGGGTGTAGCGGCCATTGTCGATGAACTTCCTTACATTGAGCTCTTCTTGTTGTATACAAAATGCAAGTTCAGGACTGTTGGACAAGAGTTCACAAAAAGTGGATGGGGATTTGCATTCCAAAGGGACTCACCTCTAGCAGTTGATCTATCCACCGCCATTCTCCAACTTTCAGAAAATGGCGACCTCCAAAAGATCCATGATAAATGGCTGTCAAAATCCGATTGCAATTCACAAGTCAACCAGGTGGACGACAACCGCTTATCTATCAGCAGCTTCTGGGGACTTTTTCTTATTTGCGGTATCGTCTGCATCCTTGCTCTTGCTGTGTTCTTCCTTAGAGTGCTCTTTCAATATTTGAAATTCGTATCGGAGTTTGAAAGGGATGTTGAGGAGATCGAGCCGGAAAGTTCTAGGCGCACAAGCCAGGGAACGAGCTTTAAAAGCTTTACGGATTTCGTCGATAAGAGAGAGATTGAGGTTAAGCAGCAGAGACTTAAGAGAAAGGCTAGTCAAGATGGGAAACAAGGGGCTAGCTTAAGCTCGGACGTGCAGTCCAATTCATCGTTTTAA 2856 43.24 MNNFKAQPSARLLGTLSMEFFFRMVVVLVICLCTPVGTMGATGNASSSTGLSKPSVVNIGALYTFDSVIGRSAKLAILAAIDDVNANASILPQTKLNVILHDTNCSGFLGTVEGLQLVEDEVVAAIGPQSSGIAHIISHVVTELHIPLLSFATDPTLAALQYPYFLRTTQSDYFQMNAITDLVAYYGWREVIAIFVDDDYGRNGISALGDALAKKRAKISYKAALTPGASRSRINDLLVEVNLMESRVYVVHVNPDSGLTIFSVAKALEMMGNGYVWIATDWLPSFLDSLDTTNSDIMNSIQGVVTLRHYTRDSNLKKNFGLKWKGLKYNRSMNFNSYALYAYDSVWLVAHALDLFFKEGGNISFSNDPKLHDANRSMLHLTSLRIFDRGPQLLQTILRMNFLGLSGRIAFDSEKNLVNPAYDVLNVGGTGMLRIGYWSNYSGLSKVTPEILYTKPPNTSSSNQNLYSVIWPGETTTIPRGWVFPNNGKPLRIGVPNRVSYKEYVSKDKNPPGVRGFCIDVFEAALSLLPYAVPHTYILYGNGKDNPEYSNLVYAVSQNRFDAAVGDVTITTNRTKTVDFTQPYVESGLVVVVAVKEQKSSPWTFLRPFTIQMWCVTSVFFLFVGAVVWILEHRTNSEFRGPPRQQLITIFWFSLSTMFFSHRENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQRLESKIEGIESLISSSEPIGVQVGSFAFKYLINELNIAESRIVKLKGQEEYESALLRGPTGGGVAAIVDELPYIELFLLYTKCKFRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQKIHDKWLSKSDCNSQVNQVDDNRLSISSFWGLFLICGIVCILALAVFFLRVLFQYLKFVSEFERDVEEIEPESSRRTSQGTSFKSFTDFVDKREIEVKQQRLKRKASQDGKQGASLSSDVQSNSSF 951
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9895168 9900391 + Conep10aG0131900.1 Cone10ag1283 447081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1283 951 CDD PBP1_GABAb_receptor_plant 58 447 IPR044440 -
Cone10ag1283 951 SUPERFAMILY Periplasmic binding protein-like II 467 834 - -
Cone10ag1283 951 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 57 904 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cone10ag1283 951 Gene3D - 486 600 - -
Cone10ag1283 951 Pfam Bacterial extracellular solute-binding proteins, family 3 548 610 IPR001638 -
Cone10ag1283 951 FunFam Glutamate receptor 728 836 - -
Cone10ag1283 951 SUPERFAMILY Periplasmic binding protein-like I 52 483 IPR028082 -
Cone10ag1283 951 SMART GluR_14 492 834 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone10ag1283 951 FunFam Glutamate receptor 602 732 - -
Cone10ag1283 951 MobiDBLite consensus disorder prediction 925 951 - -
Cone10ag1283 951 Gene3D - 171 444 - -
Cone10ag1283 951 FunFam Glutamate receptor 486 602 - -
Cone10ag1283 951 CDD GluR_Plant 489 832 - -
Cone10ag1283 951 Gene3D - 601 741 - -
Cone10ag1283 951 FunFam Glutamate receptor 171 326 - -
Cone10ag1283 951 Gene3D - 75 419 - -
Cone10ag1283 951 PIRSF IGluLR_plant 17 950 IPR017103 -
Cone10ag1283 951 Pfam Ligand-gated ion channel 834 864 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone10ag1283 951 Pfam Receptor family ligand binding region 74 429 IPR001828 -
Cone10ag1283 951 Gene3D - 780 839 - -
Cone10ag1283 951 MobiDBLite consensus disorder prediction 935 951 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1283 Cone-Chr10:9895168 Cone3ag1340 Cone-Chr3:32383157 0 dispersed
Cone10ag1283 Cone-Chr10:9895168 Cone3ag1339 Cone-Chr3:32373385 1.97e-310 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1283 K05387 - rcu:8274830 1332.01