Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1284 ATGTTCCAACCGTACATGTTGGAGAGTCACCAAGTACCCCACCCACTAGATCACATGACACAGAACACATCGGATGATAGTGATCCGGAAAGAAGAATGGGCCGAGATGATGATTTTGACAATGCTACAAAATCCGACGGCCTCGACAGAGCCGTTTCGGGTGGTGGGACTGGAGATGACAAAGATCAGCAACGCCGCAATAAACGGAAGCGCTACCACCGCCACACTCAGCATCAGATCCAAGAAATGGAAGCATTTTTCAAGGAGTGTCCACACCCAGATGACAAACAAAGGAAGGAACTGAGCAAGGAATTAGGGTTAGAGCCATTACAAGTCAAGTTTTGGTTCCAAAACAAACGTACACAAATGAAGACACAACATGAGCGGCATGAAAACACACAACTTCGAAATGAAAATGAAAAGCTGAGAATTGATAATATGAGATATAGAGAAGCTCTAAGCAATGCCTCATGTCCCAATTGTGGAGGCCCGACCGCCATTGGAGAGATGTCGTTTGATGAACATCATTTGAGGATTGAAAATGCCCATCTCCGCGAAGAGATTGATCGAATTTCAGGTATAGCTGCGAAATATGTCGGCAAGCCAATTGGAAACTTCCCTAGTAGTCTCCTCTCTCCATCCAATATGCCACCTCGCCCACTTGAACTGGGCATGATGAATTACAGTGGGCCCACACCGGGTATTGGCGGCGGGGACATATACGGAGGGGGAGGAGATCTTTTAAGGTCAATTGCACCACCAACCGAGGCTGATAAGCCGATGGTGGTAGACCTAGCGGTTTTGGCCATGGAGGAACTAATCCAAATGGCTCAAATTGGAGAGCCCTTGTGGATGCCAAGCGTTGATATGATGAACACTGTAGTGCTCAACGAGGATGAGTATATGCGATCATTTCCTAGAGGAATAGGTCCTAGGCCTTCTGGGTTTAAGTGTGAAGCTTCGCGTGAAACGGCGGTTGTCATCATGGATCATATAAACCTCGTTTCGATGCTCATGGATGTGAATCAGTGGTCGACTGTCTTTTCTGGGATTGTCTCAAGAGCTTTGACGCTTGAAGTATGGTCAACTGGTGTGGCTGGAAGTTACAATGGTGCCGTTCAAGTGATGACATCGGAATTTCAAGTTCCTTCACCACTAGTTCCCACACGGGAGAGCTACTTCGTAAGGTACTGTAAACAGCATGCTGATGGCACGTGGGCAGTGGTTGATGTTTCCTTGGACAACCTTCGCCCCAGTCCAAGTCCATTAAGATGTAGAAGAAGGCCATCCGGCTGTCTGATCCAGGAAATGCCCAATGGCTATTCAAAGGTAACATGGGTAGAACATGTAGAGGTGGATGATAGAGGAGTTCACAATCTATACAAGCAGCTCGTAAGCTCGGGTCATGCATTTGGTGCTAAGCGCTGGGTTTCGATCTTAGACCGACAGTGCGAACGTCTCGCCAGCACTATGGCAACCAACATCCCAACCGGCGACGTCGGAGTACTAACGAGTGAAGATGGGAGAAAGAGCATGTTGAAGCTGGCAGAGAGAATGGTGATAAGCTTCTGTGGAGGAGTGAGCGCGTCCACAACACATACATGGACGACACTGTCCGGCACTGGTGCTGATGATCACGTTAGAGTTATGACAAGGAAGAGCATAGATGATCCAGGCCGACCTCCTGGAATTGTGCTTAGTGCTGCTACTTCCTTCTGGCTTCCCGTTCCTCCCAAAAGAGTTTTCAATTTCCTCCGTGACGAAAATTCTCGTAGCGAGTGGGACATTCTATCAAATGGTGGAGTTGTTCAAGAAATGGCACACATTGCTAATGGCAGAGACACAGGCAATTGTGTCTCTTTGTTGCGGGTAAATAGTGCAAATTCAAGCCAGAGCAACATGCTAATATTACAAGAGAGTTGCACAGACCAAACAGGCTCTTACGTAGTCTACGCTCCCGTCGATATAGTTGCGATGAACGTTGTCTTGAACGGTGGGGACCCAGATTACGTGGCACTACTGCCATCAGGATTTGCTATCCTACCTCATGGAACTAATTGTTCTTCATCCAACGGTCATCATCAAATCAGTGCGGGATCGTCATCATCATCTGCACCGTCATCTTCTGGTGGTTCCCTCTTGACCGTTGCTTTCCAGATTCTGGTTGATTCCGTCCCAACAGCTAAGCTGAATCTTGGCTCAGTTGCTACTGTTAACAATCTCATTGCCTGCACAGTTGAAAGGATCAAAGCTGCTTTATCATGCGACAATGCATGA 2277 47.56 MFQPYMLESHQVPHPLDHMTQNTSDDSDPERRMGRDDDFDNATKSDGLDRAVSGGGTGDDKDQQRRNKRKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSKELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRNENEKLRIDNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRIENAHLREEIDRISGIAAKYVGKPIGNFPSSLLSPSNMPPRPLELGMMNYSGPTPGIGGGDIYGGGGDLLRSIAPPTEADKPMVVDLAVLAMEELIQMAQIGEPLWMPSVDMMNTVVLNEDEYMRSFPRGIGPRPSGFKCEASRETAVVIMDHINLVSMLMDVNQWSTVFSGIVSRALTLEVWSTGVAGSYNGAVQVMTSEFQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPSPLRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWVSILDRQCERLASTMATNIPTGDVGVLTSEDGRKSMLKLAERMVISFCGGVSASTTHTWTTLSGTGADDHVRVMTRKSIDDPGRPPGIVLSAATSFWLPVPPKRVFNFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDQTGSYVVYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPHGTNCSSSNGHHQISAGSSSSSAPSSSGGSLLTVAFQILVDSVPTAKLNLGSVATVNNLIACTVERIKAALSCDNA 758
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9902693 9907345 - Conep10aG0132000.1 Cone10ag1284 447082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1284 758 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 59 755 IPR042160 -
Cone10ag1284 758 Pfam START domain 269 486 IPR002913 GO:0008289(InterPro)
Cone10ag1284 758 FunFam Homeobox-leucine zipper protein HDG1 56 142 - -
Cone10ag1284 758 Pfam Homeodomain 69 124 IPR001356 GO:0003677(InterPro)
Cone10ag1284 758 SMART HOX_1 67 130 IPR001356 GO:0003677(InterPro)
Cone10ag1284 758 MobiDBLite consensus disorder prediction 1 78 - -
Cone10ag1284 758 SUPERFAMILY Bet v1-like 255 488 - -
Cone10ag1284 758 Gene3D - 57 143 - -
Cone10ag1284 758 ProSiteProfiles 'Homeobox' domain profile. 66 126 IPR001356 GO:0003677(InterPro)
Cone10ag1284 758 CDD START_ArGLABRA2_like 259 485 - -
Cone10ag1284 758 ProSiteProfiles START domain profile. 255 489 IPR002913 GO:0008289(InterPro)
Cone10ag1284 758 SMART START_1 264 486 IPR002913 GO:0008289(InterPro)
Cone10ag1284 758 SUPERFAMILY Bet v1-like 507 750 - -
Cone10ag1284 758 MobiDBLite consensus disorder prediction 21 45 - -
Cone10ag1284 758 FunFam Homeobox-leucine zipper protein GLABRA 2 264 485 - -
Cone10ag1284 758 SUPERFAMILY Homeodomain-like 57 126 IPR009057 -
Cone10ag1284 758 Coils Coil 132 152 - -
Cone10ag1284 758 ProSitePatterns 'Homeobox' domain signature. 101 124 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone10ag1284 758 CDD homeodomain 68 127 IPR001356 GO:0003677(InterPro)
Cone10ag1284 758 Gene3D - 332 481 IPR023393 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1284 Cone-Chr10:9902693 Cone3ag1343 Cone-Chr3:32393603 0 dispersed
Cone10ag1284 Cone-Chr10:9902693 Cone12ag1384 Cone-Chr12:10229796 0 wgd
Cone10ag1284 Cone-Chr10:9902693 Cone14ag1128 Cone-Chr14:9389140 1.09E-109 wgd
Cone10ag1284 Cone-Chr10:9902693 Cone15ag1147 Cone-Chr15:9316403 6.15E-11 wgd
Cone10ag1284 Cone-Chr10:9902693 Cone3ag1342 Cone-Chr3:32391730 2.47E-74 wgd
Cone10ag1284 Cone-Chr10:9902693 Cone8ag1442 Cone-Chr8:11179665 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44253 PF01636 APH 1.10E-16 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1284 K09338 - gmx:100809556 1160.98