Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1327 ATGAGGAGGCTCTTCTTCTTCAAACGCCATAGCAGCAGCGTCCTCCCACCTCACACTTCATCAAACCTTGAAAACAACCCATTTATAACAAAAGAAACTCAAATTCTGAACCTCTGCAAATCCGGTTCACTCCTCGACGCTATTCAAGTCCTAAATTCCATCCATTCTAGCCACGAAATCACCGTCAAGCCAATCCTGTACGCTTCTCTTCTACAAACCTGCGTAAAGGTCGTTTCTTTCAACCATGGACTCCAAATCCACGCTCATATCATCAAGTCTGGCCTCGATACCGATCGATTCATTGGTAACAACTTACTCTCTCTTTACTTCAAACTTAGTCCTGATTTTTCCCAGACGGAAAGAATGTTTCGATCGCTTTTCGTTAAGGATGTGGTGTCATGGACATCTATGATAACTCGTTACAATAAAATCGGAAAACCCGGAGTTTCCATTGGAATTTTCCAGAACATGTTGGATTCTGGAATCGAGCCAAATGGGCATTCCTTATCTGCTGTGATTAAAGCTTGTTCCGAGTTTGGAGATTTAAAACGCGGGACGTTATTTCATGGGTTGGTTTTGAAACACGGGTTTGTTTCGAATCATGTAATTATAAGCTCTTTGATTGACATGTATGGAAGAAATTACGAGTCGAGGAATGCGCGCAAACTGTTCGATGAATTGCCTGAACCAGATTCGATATGTTGGACTTCAGTAATTTCGGCTTTTACCCGAAACGATTTTTACGAGGAAGGCTTAAGATTCTTTTACTTGATGCACAGGATTCACGGCTTGTTACCTGATGGTTTTACCTTCGGGCCTGTTTTAACTGCTTGTGGCAATTTAAAAAGATTAAGACAGGGTAAGGAAGTACACTCTAAGGTTATTTTATATGGACTTGTTGGGAATGTTGTTGTAGAGAGTAGCCTTGTTGATATGTACGGAAAATGCGGGTCCCTATTAGAATGTCAAAAAGTTTTCGATCGAATGGAGAAAAAAAATTTGATTTCTTGGTCAGCATTACTTGCTTCATATTGTCACAACAGTGAATATGAAGCTGTAATTAGGATTTTCCGTGAATTTGGATTTATTGATCTATATAATTTTGGAACCGTTCTTCGTGCTTGTTCGGGTTTAGCAGCTGTAAGACAAGGGAAAGAGGTTCATTGCCAATATGTTAGAAGACGCGGTTGGAGAGATGTTATAATAGAATCGGCTCTGGTTGATCTCTATGCAAAGTGCGGTTGTATTGATTTTGCTTATCGGGTATTTGCACAAATGACCGTTAGAAATTACATAACTTGGAACTCTATGATTTTTGGGTTTGCTCAAAATGGAAGAGGACTAGAAGCTCTTGAAATATTTAATCACATGATGATCAATGAAGATATGAAGCCGGATTATATAACCTTCATAGGTGTCCTTTTCGCCTGCAGCCATGCTGGATTGGTCAATCAAGGAAGAAATTACTTTAACTTAATGATAAATGAATTTAAGATTAAACCTGGGATTGAGCATTATAATTGTATGGTAGATCTTCTAGCTCGGGCCGGGCTTCTAGAAGAAGCTGAAAATTTGATCGAGGGTGCGGAATGTAGAGATGATTCATCTCTTTGGCAAGTTCTTTTGGGTGCTTGTACGACTTTTACGGATTCTGGTACGGCGGAAAGGATTGCGAAGAAGATGATGGAACTTCAGCCGGATCATCATTTGAGTTATGTTTATTTGGGTAATGTTTATAAGGCGATAGGGAGGTGGGATGATGCGGCTAAGGTTCGAACGTTGATGAGAGATAGACATGTTGAGAAGATGCCTGGCCAGAGCTGGATCGAGAGTAATAAGGCTTTCGGTTTTCGTTTGCAACTTGGTGGTTTAGTCGAGCCTGAGGAAACTGGTAGTCTAGCTGTTGAGAATTCTTGTGACTACAAAATTTGCAATTCTCAATGA 1944 40.28 MRRLFFFKRHSSSVLPPHTSSNLENNPFITKETQILNLCKSGSLLDAIQVLNSIHSSHEITVKPILYASLLQTCVKVVSFNHGLQIHAHIIKSGLDTDRFIGNNLLSLYFKLSPDFSQTERMFRSLFVKDVVSWTSMITRYNKIGKPGVSIGIFQNMLDSGIEPNGHSLSAVIKACSEFGDLKRGTLFHGLVLKHGFVSNHVIISSLIDMYGRNYESRNARKLFDELPEPDSICWTSVISAFTRNDFYEEGLRFFYLMHRIHGLLPDGFTFGPVLTACGNLKRLRQGKEVHSKVILYGLVGNVVVESSLVDMYGKCGSLLECQKVFDRMEKKNLISWSALLASYCHNSEYEAVIRIFREFGFIDLYNFGTVLRACSGLAAVRQGKEVHCQYVRRRGWRDVIIESALVDLYAKCGCIDFAYRVFAQMTVRNYITWNSMIFGFAQNGRGLEALEIFNHMMINEDMKPDYITFIGVLFACSHAGLVNQGRNYFNLMINEFKIKPGIEHYNCMVDLLARAGLLEEAENLIEGAECRDDSSLWQVLLGACTTFTDSGTAERIAKKMMELQPDHHLSYVYLGNVYKAIGRWDDAAKVRTLMRDRHVEKMPGQSWIESNKAFGFRLQLGGLVEPEETGSLAVENSCDYKICNSQ 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10347494 10349514 + Conep10aG0136900.1 Cone10ag1327 447125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1327 647 Pfam PPR repeat 234 260 IPR002885 -
Cone10ag1327 647 Pfam PPR repeat 432 458 IPR002885 -
Cone10ag1327 647 Pfam PPR repeat 505 527 IPR002885 -
Cone10ag1327 647 Pfam PPR repeat 307 333 IPR002885 -
Cone10ag1327 647 Pfam PPR repeat 335 359 IPR002885 -
Cone10ag1327 647 Pfam PPR repeat 205 228 IPR002885 -
Cone10ag1327 647 Pfam PPR repeat 404 429 IPR002885 -
Cone10ag1327 647 Pfam PPR repeat family 129 177 IPR002885 -
Cone10ag1327 647 FunFam Putative pentatricopeptide repeat-containing protein, mitochondrial 32 188 - -
Cone10ag1327 647 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 401 620 - -
Cone10ag1327 647 Gene3D Tetratricopeptide repeat domain 188 286 IPR011990 GO:0005515(InterPro)
Cone10ag1327 647 Gene3D Tetratricopeptide repeat domain 30 187 IPR011990 GO:0005515(InterPro)
Cone10ag1327 647 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Cone10ag1327 647 PANTHER OS07G0578800 PROTEIN-RELATED 286 614 IPR045215 GO:0003723(PANTHER)|GO:0003723(InterPro)|GO:0009451(PANTHER)|GO:0009451(InterPro)|GO:0043231(PANTHER)
Cone10ag1327 647 SUPERFAMILY TPR-like 538 590 IPR011990 GO:0005515(InterPro)
Cone10ag1327 647 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 430 465 IPR002885 -
Cone10ag1327 647 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Cone10ag1327 647 Gene3D Tetratricopeptide repeat domain 287 362 IPR011990 GO:0005515(InterPro)
Cone10ag1327 647 Gene3D Tetratricopeptide repeat domain 363 494 IPR011990 GO:0005515(InterPro)
Cone10ag1327 647 Gene3D Tetratricopeptide repeat domain 495 620 IPR011990 GO:0005515(InterPro)
Cone10ag1327 647 NCBIfam pentatricopeptide repeat 132 165 IPR002885 -
Cone10ag1327 647 NCBIfam pentatricopeptide repeat 432 466 IPR002885 -
Cone10ag1327 647 NCBIfam pentatricopeptide repeat 233 267 IPR002885 -
Cone10ag1327 647 Pfam E motif 551 610 IPR046848 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1327 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1327 Cone-Chr10:10347494 Cone11ag0408 Cone-Chr11:2022739 3.32E-124 dispersed
Cone10ag1327 Cone-Chr10:10347494 Cone19ag0653 Cone-Chr19:5569211 1.97E-110 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g283 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone10ag1327 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013463 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 1 1 1 0 1 25