Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1343 ATGGAAATAGAACAATTCTTAGAAGATTCTACACTGCAAAACAGATCATTTCTCGAAAACACACCCGATTTCAAGACATGTAATTATGTTTCGGAATCTATGTCTGAATCTAACAATGGACAGTCAAGTTGTTTCGACTGCAATATATGTCTAGACTCGGTCCACGACCCGGTTGTTACTCTTTGTGGCCATCTCTTCTGTTGGCCCTGCATTTACAAATGGCTTAGCGTTGAGACCAACTCTTTGGAAAGACAAGATCGACAACGATGTCCGGTATGCAAGGCTCAAGTCTCTCACTCTACTTTGGTCCCACTTTATGGAAAAGGCTCCACGGAAAAGCCATCCAAAAGCAAATCTCTGCATCTTGGAATAGTCATTCCACGCCGGCCTCTGGCTCCCACATCATGTGGGAACGAGTCACCAAGGTCATATACTCACACGACAACGAGTCAGCATAATGGTTATTCGGTTCGAGCTGGGAATTATAATAGCCATTCTTCTTCATCGGAGGGGCTTGGTCCAGGCCAGACAATGACGAGCTTGCTCAGTCCAATGAATGGAGGGTTTGGACAAATGGTATATGCGAGGGCATTTGGGAATGATATTACGAACTTGTATGCTTATCCAAATTCGCATGATCTTTACCGGAGTGTTAATAGTCCTAGAGTTCGGAGGCTTATAATGGAGACCGATAAATCACTCAACAGAATCTGTTTGTTCCTTTTCTGTTGCTTGATTTTGTGTCTTTTGACATTTTAG 759 43.21 MEIEQFLEDSTLQNRSFLENTPDFKTCNYVSESMSESNNGQSSCFDCNICLDSVHDPVVTLCGHLFCWPCIYKWLSVETNSLERQDRQRCPVCKAQVSHSTLVPLYGKGSTEKPSKSKSLHLGIVIPRRPLAPTSCGNESPRSYTHTTTSQHNGYSVRAGNYNSHSSSSEGLGPGQTMTSLLSPMNGGFGQMVYARAFGNDITNLYAYPNSHDLYRSVNSPRVRRLIMETDKSLNRICLFLFCCLILCLLTF 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10476717 10478789 - Conep10aG0138500.1 Cone10ag1343 447141

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1343 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 107 IPR013083 -
Cone10ag1343 252 ProSiteProfiles Zinc finger RING-type profile. 47 94 IPR001841 -
Cone10ag1343 252 SUPERFAMILY RING/U-box 42 106 - -
Cone10ag1343 252 CDD RING-HC_AtRMA-like 45 95 - -
Cone10ag1343 252 SMART ring_2 47 93 IPR001841 -
Cone10ag1343 252 Pfam RING-type zinc-finger 47 91 IPR027370 -
Cone10ag1343 252 ProSitePatterns Zinc finger RING-type signature. 62 71 IPR017907 -
Cone10ag1343 252 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 33 243 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1343 K10666 - - rcu:8262073 229.565
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1343 Cone-Chr10:10476717 Cone1ag0158 Cone-Chr1:883512 1.77E-56 dispersed
Cone10ag1343 Cone-Chr10:10476717 Cone12ag1456 Cone-Chr12:10470220 3.30E-64 wgd
Cone10ag1343 Cone-Chr10:10476717 Cone3ag1414 Cone-Chr3:32967377 3.88E-159 wgd
Cone10ag1343 Cone-Chr10:10476717 Cone9ag0165 Cone-Chr9:727323 8.33E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g241 . . Bda07g00293 . . Bpe02g01905 Bma10g00503 . . . . Cma09g00872 Car01g01030 Car09g00785 Sed06g0407 Cpe06g00695 Cpe02g00705 Bhi09g03405 Tan01g4405 Cmetu07g2305 . Hepe01g1379 Mch11g1077 . Cla11g01769 . . Cco11g1863 . . Cre11g2213 Cone3ag1414 Cone10ag1343 . Cone12ag1456 Lsi04g01328 Csa04g02351 Chy07g00084 . . . . . Bpe11g00486 Bpe03g00833 . Bma14g00232 . Cmo01g01258 Cmo09g00861 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006556 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 0 38