Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1351 ATGGGTCAAGCATGTTTTAAGCCTTCATCTAATGAAGAAAACCAAGACAGCCCGAATGTCAAAAGATTTCCAATCCGAAAAACTTCTCGTGTGAATTCATCGAAACGACAGGAAGATGTTCGATTGAATGACTCAAAGAGAACAGAACTGAACATTATTCGGTTGAATTCGTCAAGGAACAGAGAAGAAGGAATCCGCTTCAATCCGTCTACAAAAGAAGAGGGTGTCAGATTGAATTCAATGGGGAGAAGAGGAGGAGAAACTAATGGCCCATCCAAAGCAAAATTGAATGGTAATGGTAATGTTGCCTTGCTTGACAAGAAAGTCAATGGTTCAACTCGGGTTTATTATGATCAGATCGTTGAGAAGAAGAAGAGGGAGAAGGTGGGACCGGTTTTTGTTGATTATCCAGGTAAAGGAAGTGTTCCAAATGTTGTAGAAGCAGAGCAAGTTGCAGCAGGGTGGCCAGCTTGGCTTTCTGCTGTAGCAGGCGAAGCAATCAAAGGATGGCTACCAAGGCGAGCCGATACTTTCGAGAAGTTAGAAAAGATAGGGCAAGGGACTTATAGTAGTGTTTATAAGGCTCGTGATATAATTCGTGACAAACTGGTCGCTTTGAAACGAGTAAGATTTGATAATCTTGATATGGAGAGCGTCAAGTTCATGGCAAGAGAAATCCTTATCCTACGTAGTCTTGATCATCCAAACGTCATACAATTGGAAGGTTTGATTACTTCCTCAAAGTCTTGTAGCTTGTACATTGTTTTCGAGTATATGGAACATGATCTTACCGGCCTCGCATCCAATCCCAGCATCAAGTTCACTGAATCACAGGTCAAATGTTTTATGCAACAACTTCTAAGAGGGCTCGATTATTGTCATAGTCACGGTGTTCTTCATCGCGACATAAAGGGTTCAAATCTACTGATTGACGATAATGGTGTATTGAAGATTGCGGATCTTGGCTTAGCCAGTTTTTTCGATCCTTACAATAGTCTTCCATTAACAAGCCGTGTAGTAACTCTTTGGTATCGTCCGCCTGAGCTTTTACTTGGAGCTTCCCACTATGGTGCTGCTGTTGACTTATGGAGCACAGGTTGTTTACTAGCTGAGTTATATAATGGCAAGCCTATCTTACCTGGAAAAACCGAGGTTGAACAACTGCATAACATATATAAGCTTTGTGGGTCCCCATCTGAGGATTATTGGAGAAAACTGAAAATGCGCAACTCAACGGTTTTCAAGCCTGCACAGCCTTATCAACGATGTGTTACGGAAACATTTAAGGAATTTCCACCTGCTGCTATTTCACTTGTAGATACATTGCTTTCTCTAGATCCTTCAAGTCGAGGAACTGCAGCTCTTGCTCTTAAGAGTGAGTTCTTCACGACTAAACCTTTTGCCTGTGATCCTTCGAGTTTGCCTAAATATCCCCCCAGCAAAGAGATTGATGCAAAATTGCGTAAAGGAGGTAGAAGGTTCGAAACTGTTGGGGACAAGGACCCGAAAACGGATGCAGATGGGAAACAAGCTAAAGAATCTCAAGATAATATTGCTCTTAATGCTAAAAATGCCGACTCCATCACAACTTTACAGAAAAGAAAAGGATATTCGAATTCACTGAGCCGGAGAGAACAGGTTGACCCTCGTCGGGAAGAACCCGGTTCCGGTTTCCTAATGGGCCCACATAAACAAATATCACATGCTGCAAAAGAACTGAACAGAGACACCCACAGGACATCCTTCTCCGGCCCACTAGTACCCAGCCCAACATGGACCAAATCCGTAAAGGAATTTGACCATACTACAATGGTCCCGAACCGGGCTGTTAACTTGACAACATTGTCTGGTCTAGTAGCAACTCGGATCATTACATCTGAAGATCGCCGGGATCATAAGCCTGGCCCATCACAGCGAGAGGTTTTGCATAATAATGAATTGGAGGGGGCTAGAAAGCAGGACCGAAAACGTTACACTCAGAGAGTTGCAGATTCTTATCAGATTGATCATAATGGGAAAACTTCGATTAGAAATCCAACTATGTATGGTCCAAGGGGGAGGAAGATTTTTGTGTCTGGTCCACTTCTTGGGCCATCAAACAATGTGGAGAAGATGCTGAAAGATCATGATCGGCGGATCCAGGAGCATACTCGACAAGCACGATACGGGAACCTTAACACTCAGATTAAGCAAGGACATGGAGCTGGACTATAA 2214 43.13 MGQACFKPSSNEENQDSPNVKRFPIRKTSRVNSSKRQEDVRLNDSKRTELNIIRLNSSRNREEGIRFNPSTKEEGVRLNSMGRRGGETNGPSKAKLNGNGNVALLDKKVNGSTRVYYDQIVEKKKREKVGPVFVDYPGKGSVPNVVEAEQVAAGWPAWLSAVAGEAIKGWLPRRADTFEKLEKIGQGTYSSVYKARDIIRDKLVALKRVRFDNLDMESVKFMAREILILRSLDHPNVIQLEGLITSSKSCSLYIVFEYMEHDLTGLASNPSIKFTESQVKCFMQQLLRGLDYCHSHGVLHRDIKGSNLLIDDNGVLKIADLGLASFFDPYNSLPLTSRVVTLWYRPPELLLGASHYGAAVDLWSTGCLLAELYNGKPILPGKTEVEQLHNIYKLCGSPSEDYWRKLKMRNSTVFKPAQPYQRCVTETFKEFPPAAISLVDTLLSLDPSSRGTAALALKSEFFTTKPFACDPSSLPKYPPSKEIDAKLRKGGRRFETVGDKDPKTDADGKQAKESQDNIALNAKNADSITTLQKRKGYSNSLSRREQVDPRREEPGSGFLMGPHKQISHAAKELNRDTHRTSFSGPLVPSPTWTKSVKEFDHTTMVPNRAVNLTTLSGLVATRIITSEDRRDHKPGPSQREVLHNNELEGARKQDRKRYTQRVADSYQIDHNGKTSIRNPTMYGPRGRKIFVSGPLLGPSNNVEKMLKDHDRRIQEHTRQARYGNLNTQIKQGHGAGL 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10524409 10530624 + Conep10aG0139300.1 Cone10ag1351 447149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1351 737 MobiDBLite consensus disorder prediction 538 552 - -
Cone10ag1351 737 MobiDBLite consensus disorder prediction 69 99 - -
Cone10ag1351 737 MobiDBLite consensus disorder prediction 626 659 - -
Cone10ag1351 737 MobiDBLite consensus disorder prediction 514 537 - -
Cone10ag1351 737 ProSiteProfiles Protein kinase domain profile. 178 462 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag1351 737 MobiDBLite consensus disorder prediction 489 512 - -
Cone10ag1351 737 MobiDBLite consensus disorder prediction 489 572 - -
Cone10ag1351 737 Gene3D Transferase(Phosphotransferase) domain 1 261 500 - -
Cone10ag1351 737 FunFam probable serine/threonine-protein kinase At1g54610 165 260 - -
Cone10ag1351 737 MobiDBLite consensus disorder prediction 1 43 - -
Cone10ag1351 737 PANTHER CELL DIVISION PROTEIN KINASE 177 462 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cone10ag1351 737 SMART serkin_6 178 462 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag1351 737 ProSitePatterns Serine/Threonine protein kinases active-site signature. 298 310 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone10ag1351 737 Coils Coil 699 719 - -
Cone10ag1351 737 FunFam probable serine/threonine-protein kinase At1g54610 261 501 - -
Cone10ag1351 737 Gene3D Phosphorylase Kinase; domain 1 165 260 - -
Cone10ag1351 737 Pfam Protein kinase domain 178 462 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag1351 737 CDD STKc_CDK9_like 178 462 - -
Cone10ag1351 737 MobiDBLite consensus disorder prediction 1 22 - -
Cone10ag1351 737 SUPERFAMILY Protein kinase-like (PK-like) 172 468 IPR011009 -
Cone10ag1351 737 ProSitePatterns Protein kinases ATP-binding region signature. 184 207 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1351 Cone-Chr10:10524409 Cone3ag1421 Cone-Chr3:33002881 0 dispersed
Cone10ag1351 Cone-Chr10:10524409 Cone12ag1466 Cone-Chr12:10498908 3.66E-220 wgd
Cone10ag1351 Cone-Chr10:10524409 Cone14ag1063 Cone-Chr14:8962512 9.78E-222 wgd
Cone10ag1351 Cone-Chr10:10524409 Cone3ag1420 Cone-Chr3:32999063 7.41E-190 wgd
Cone10ag1351 Cone-Chr10:10524409 Cone8ag1512 Cone-Chr8:11426498 7.79E-220 wgd
Cone10ag1351 Cone-Chr10:10524409 Cone9ag0171 Cone-Chr9:760275 6.64E-237 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81849 PF02453 Reticulon 1.10E-47 CL0484 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1351 - - - 0.0