Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1362 ATGATTTCAAGATCATACACGAATCTATTAGATTTGGGTTCTGGAAATTTTCCAGCTGTGGAAGTGAAGAGGAGGCGATTTCCAAGGGTAATGACCGTTCCAGGGGTTATAGCTGAGCTTGATGATGAGCAGGCATATAGTGTGACTTCTGAAAATCCGTCCTCTATTTCTTCAGAGCGGATGATTATCGTAGCGAATCAGCTTCCTTTGAAAGCAAAGCGAAAAGAGGACAATAAAGGATGGAGTTTCTGTTGGAACGAGGATTCTTTACTCTTACAGCTTAAAGATGGTCTTCCTGAAGATCTAGATGTTTTATATGTCGGATCACTAACGGTCGATATTCATCCCGATGACCATGAGGAGGTATCCCAGTTTTTGCTCGAGAAATTTAAATGCGTTCCTACATTTCTTCCATCTGATGTTTTTGAAAAGTTTTATGACGGTTTCTGCAAGAAGCACTTGTGGCGTCTTTTCCACTATATGCTGCCGTACAATTCTGATCAAAGATTTGATCGTTCACTCTGGGAAGCTTATGTTCTAGCTAATAAGTTGTTTTTTGAAAGAGTGGTTGAAGTTATAAATCCGGATGATGATTATATTTGGATTCATGATTATCATTTAATGGTGCTTCCAACTTTCTTAAGAAGACGGTTTAACAGGCTTAGAATGGGGTTCTTTCTTCACAGCCCATTTCCTTCTTCTGAGATTTACCGAACTCTTCCTGTCAGAGAAGAAATACTTAAGGCCTTATTGAACTCTGATATTATTGGATTCCATACCTTTGATTATGCTCGCCATTTTCTCTCTTGTTGTAGTCGAATGTTGGGTTTGGAATATCAATCAAAGAGGGGATATCTTGGGTTGGAATATTACGGAAGGACAATTGGGATAAAGATTATGCCAGTCGGGATTCATATGGGTCGGATTGAGTCCATTATGAAAGCGGCAGAGGAGGAGTCTTGGGCTACAGAACTTGAAAATCAGTTTTGTGGGAAAACAGTGTTGCTGGGAGTTGATGATATGGACATTTTCAAAGGTATTGATTTGAAGCTCTTGGCAATGGAACAGATGCTAAAGGAACATCCTGAATGGCAGGGAAAAGCTGTGCTAGTCCAGATTGTAAACCCGGTAAGAGGCAGAGGGGAAGATTTAAAAGGAATGGAGGATGATATAAAACAAATTTCTCATAAGATCAATACAAAATACCGGAAACCTGGCTATGAGCCAATAATTCTAATTGATGGGCCGGTTTCAATCTCTGAAGCAGTTGCATATTTCAGCATTGCAGAGTGTGTTGTAGTGACAGCTGTTAGGGATGGGATGAACCTTACTCCTTATGAATATATTGCTATAAGACAAGGAGTGTCTGGTTCTAGTTCTGGATCTTGTTCTAATTCCAATAGCTTAAAGAAGAGTATGTTAGTGGTGTCAGAATTCATTGGATGTTCTCCATCACTCAGTGGAGCGATTCGAGTCAACCCATGGAATGTTGAAACGACTGCTGGGGCCATGAATGAAGCGATTTCAATGCCTGATACTGAAAAACAGTTGAGGCATGAGAAGCATTATCGTTATGTAAGCACCCATGATGTGGCTTATTGGTCGCATAGTTTCTTACAAGACATGGAGAGGGCATGTTTGGACCATTTTAGAAGAAGATGTTGGGGTATTGGTTTTAGCTTTGGGTTTAGAGTTGTGGCTCTTGATCCTAACTTCCGGAAGCTTTCAATAGACAAGATTGTATCAGCTTATGGCCAGGCACAGAGTCGGGCTATTCTTTTGGACTATGATGGAACAGTGATGCCCCAAAATTCCATCAACAAGTCTCCAAGTCAAGGTGTTATCTCTATCCTCAACACACTTTGTGCAGATGGGAAAAATTTAGTTTTCATTGTTAGTGGAAGAAGCAGGGACAGCTTAGGCAAGTGGTTTTGCCCTTGCACAAAGCTTGGAATTGCAGCCGAACATGGATACTTCTTGAGATGGGCCCAAAATGATGAATGGGAAACTTGTGGTCAGAGCATTGAATTCGGATGGATGCAAATTGCTGAACCTGTCATGAAATTGTATACTGAGGCAACTGATGGTTCTTCCATTGAAAGAAAGGAAAGTGCATTGGTATGGCAATATAGAGACGCTGAATTGGGATTTGGATCTTTCCAGGCAAAGGAGATGTTAGATCATCTTGAGAGTGTTTTAGCAAATGAACCTGTCGCTGTTAAGAGTGGCCAATTTATTGTAGAGGTTAAACCTCAGGGAGTAAGCAAAGGGCTGGTTGCAGAAAAGATCTTTACTTCAATGTCAGAGAATGGAAAACAAGCCGACTTTGTATTATGTATTGGTGACGACAGATCAGATGAGGACATGTTTGAAGTAATAGGCGATGCAATGTCGAGGAATATTCTTTCTTCCAGTACCTCCGTTTTTGCTTGTACGGTTGGACAAAAACCGAGCAGAGCCAAATACTATTTAGATGACACACCTGATGTGATAAGCATGCTTGAATCCCTAGCCGAGGCCTCTAGTACTTCACCATTGTCATCCGAAGACAAAGCTGATGATAGCTCTCCTTGA 2574 40.99 MISRSYTNLLDLGSGNFPAVEVKRRRFPRVMTVPGVIAELDDEQAYSVTSENPSSISSERMIIVANQLPLKAKRKEDNKGWSFCWNEDSLLLQLKDGLPEDLDVLYVGSLTVDIHPDDHEEVSQFLLEKFKCVPTFLPSDVFEKFYDGFCKKHLWRLFHYMLPYNSDQRFDRSLWEAYVLANKLFFERVVEVINPDDDYIWIHDYHLMVLPTFLRRRFNRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTIGIKIMPVGIHMGRIESIMKAAEEESWATELENQFCGKTVLLGVDDMDIFKGIDLKLLAMEQMLKEHPEWQGKAVLVQIVNPVRGRGEDLKGMEDDIKQISHKINTKYRKPGYEPIILIDGPVSISEAVAYFSIAECVVVTAVRDGMNLTPYEYIAIRQGVSGSSSGSCSNSNSLKKSMLVVSEFIGCSPSLSGAIRVNPWNVETTAGAMNEAISMPDTEKQLRHEKHYRYVSTHDVAYWSHSFLQDMERACLDHFRRRCWGIGFSFGFRVVALDPNFRKLSIDKIVSAYGQAQSRAILLDYDGTVMPQNSINKSPSQGVISILNTLCADGKNLVFIVSGRSRDSLGKWFCPCTKLGIAAEHGYFLRWAQNDEWETCGQSIEFGWMQIAEPVMKLYTEATDGSSIERKESALVWQYRDAELGFGSFQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQGVSKGLVAEKIFTSMSENGKQADFVLCIGDDRSDEDMFEVIGDAMSRNILSSSTSVFACTVGQKPSRAKYYLDDTPDVISMLESLAEASSTSPLSSEDKADDSSP 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10609845 10613733 - Conep10aG0140400.1 Cone10ag1362 447160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1362 857 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 719 851 - -
Cone10ag1362 857 FunFam Alpha,alpha-trehalose-phosphate synthase 312 527 - -
Cone10ag1362 857 CDD HAD_TPP 591 830 - -
Cone10ag1362 857 CDD GT20_TPS 60 543 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cone10ag1362 857 Gene3D Glycogen Phosphorylase B; 312 527 - -
Cone10ag1362 857 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 546 - -
Cone10ag1362 857 SUPERFAMILY HAD-like 590 838 IPR036412 -
Cone10ag1362 857 NCBIfam HAD-IIB family hydrolase 592 796 IPR006379 -
Cone10ag1362 857 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cone10ag1362 857 NCBIfam trehalose-phosphatase 587 838 IPR003337 GO:0005992(InterPro)
Cone10ag1362 857 MobiDBLite consensus disorder prediction 838 857 - -
Cone10ag1362 857 Gene3D - 718 852 IPR023214 -
Cone10ag1362 857 Gene3D - 589 689 IPR023214 -
Cone10ag1362 857 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 310 - -
Cone10ag1362 857 Gene3D Glycogen Phosphorylase B; 53 311 - -
Cone10ag1362 857 FunFam Trehalose-6-phosphate synthase 2 673 752 - -
Cone10ag1362 857 Pfam Trehalose-phosphatase 593 827 IPR003337 GO:0005992(InterPro)
Cone10ag1362 857 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 589 706 - -
Cone10ag1362 857 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 24 840 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1362 Cone-Chr10:10609845 Cone5ag1644 Cone-Chr5:11621706 0 dispersed
Cone10ag1362 Cone-Chr10:10609845 Cone3ag1433 Cone-Chr3:33088889 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1362 K16055 - csv:101209914 1420.6