Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1381 ATGTCGGCTTCATATCCGGCGAGTCGCATGATATTCAGTCTATGGCTAATCACCAAATCTTTATCCTTAGTACCCTCTATAGAAAGCTATGAATGTGATAGAATGTGTGGAAATGTTCCAATTCCGTACCCATTTGGAATTCAGCCCGGTTGTTACCTAAACGATAACTATGCAATAACATGTGTTACTAATTCAGTGTCCGGCATTCAAAAAGCCTTCCTAAATACCTCCAGTTCCATCGAAGTAACGGAAATATCCCTCTTCGGATATATCCGTGTGAGAAATCCAGTTTTGTATTTTAATTGTAGCACCATTTACACCTCTCCTTCGGGTGTTAATTTATCAGGCTCCCCTTTCTACTTTTCGGATACATTCAATAGATTCACAGCTTTAGGGTGTAATAATTTCGTCAGAATTACCGATAAGGACAGTATAACTATTAGTGGGTGCATTTCAATTTGCTCTAATGAACAGATTGTTACAGGTTGTTATGGTATCGACTGTTGGCAAATCACAATTCCACCTGATCTCAATTTCTTTGATGCAAACTTCACTTCTACTAATATTCAAGCCCAAAGAGGAGATTGTAGGCGGGCTTTCATGGTGGAACAAGAATGGTTTGAAGGGGAAGCATCGTTAAGGAAGAATATGAGTAACATACAAGAAAATGTTCCCGTGGTTTTGGAGTATGGTAAACAAGTAGGGTCTTGTGCAATAGTCAATCAATCACAGATTTATTGTGGGGACGATGGTCTGGGTTTGGGATATTATTGGCAGAAGATAAGCTCAAATCATTTTTGTGTTTGCAGTGAAAAGTATTTGGATCCGTCTACGGATTCGATTTCGGTATCATCGTCTTCTCTGTCATCGGCGTATAAAGATAATACTAAGTGCTCAGATGCAATTACGACTGGGTGTAGTCTAATTTGTTTATATTCACCACAAAGCATAAATTGCTCATGTCCGGATGGTTATGATCGCTCAGCTAGTTCTGACAGAACATGGTGCAATCCGTCGTATACTTCTCGATCGGAAAACGACAAATTAAAAGCTGTTGTTATAGGCGCAACTGCTGGTCCAGGACTACTAATCGTCTTGATCATTGTTTGGTTTTTATACAAGTATATAATCAAGAGAAAGGAAGAAAAACAGAAGCAGAAATTCTTTAAAAGAAATGGCGGCCTGTTGTTACAGCAAGACTTGTCTTCCAACGAAAGCAATACTGACAAAACAATGTTATTCACTTCCAAAGAGTTGGAGAAAGCCACAGATCATTACAATATGAATAGAATCCTTGGTCAAGGAGGTCAAGGAACTGTGTACAAAGGGATGTTAACAGATGGAAGAATTGTTGCAATTAAAAAGTCTAAAACAGTAGACGAAGCGAAACTTGGGCACTTTATTAATGAGGTAAGAATTTTATCACAAATTAATCATAGAAATGTTGTCAAGTTACTTGGGTGCTGTTTGGAAACTGAAGTTCCTCTATTGGTTTACGAGTTTATCCCTAATGGAACCCTCTTTGCTTACATCCATGATCAAAATGAAGAATTCCCACTCACATGGGACATACGTTTAAGGATTGCAACAGAAGTTGCTAATGCTCTCTCTTATCTTCATTCGGCAGCCTCCACTCCCATTTATCATCGTGATATTAAGTCTACAAACATTCTTCTCGATGAAAAGTATAGAGCAAAAGTCTCGGACTTTGGAACATCAAGATCAATAGAGATTGACCAAAGTCACCTGACGACTAATGTTGCCGGCACATTTGGTTACTTGGACCCAGAGTACTTTCAATCAAGTAAGCTCACTGACAAAAGTGATGTCTATAGTTTCGGGGTCGTTTTGGTTGAGCTTCTGACCGGTCAAAAGCCGATCTCTTCAATGAGATATGGGGAATATAGAAGCTTAGTAACATTTTTCCTACTTGCAATGGAGGAAAATCGTTTATTTGAAATTGTTAATGCTCAAGTTCTAAGAGAAGGTGGGAAAGATGATATTATAATAGTTGCAAAACTTGCCAAAAGATGCTTAAACTTGAAAGGGAGAAATAGACCTACAATGAAAGAAGCTGCCAAGGACCTAGAAGGGATCAAAAGGAGAAAACGAGATTTCTCAACTAAACAAAACCATGAAGTGGTCAACAATGCTTTTGAAGATATAATTCTAGCACGGGATGGTTCTTCATCTTCAAATATGTCATCTTTGAACACTGGTAGATGA 2226 38.41 MSASYPASRMIFSLWLITKSLSLVPSIESYECDRMCGNVPIPYPFGIQPGCYLNDNYAITCVTNSVSGIQKAFLNTSSSIEVTEISLFGYIRVRNPVLYFNCSTIYTSPSGVNLSGSPFYFSDTFNRFTALGCNNFVRITDKDSITISGCISICSNEQIVTGCYGIDCWQITIPPDLNFFDANFTSTNIQAQRGDCRRAFMVEQEWFEGEASLRKNMSNIQENVPVVLEYGKQVGSCAIVNQSQIYCGDDGLGLGYYWQKISSNHFCVCSEKYLDPSTDSISVSSSSLSSAYKDNTKCSDAITTGCSLICLYSPQSINCSCPDGYDRSASSDRTWCNPSYTSRSENDKLKAVVIGATAGPGLLIVLIIVWFLYKYIIKRKEEKQKQKFFKRNGGLLLQQDLSSNESNTDKTMLFTSKELEKATDHYNMNRILGQGGQGTVYKGMLTDGRIVAIKKSKTVDEAKLGHFINEVRILSQINHRNVVKLLGCCLETEVPLLVYEFIPNGTLFAYIHDQNEEFPLTWDIRLRIATEVANALSYLHSAASTPIYHRDIKSTNILLDEKYRAKVSDFGTSRSIEIDQSHLTTNVAGTFGYLDPEYFQSSKLTDKSDVYSFGVVLVELLTGQKPISSMRYGEYRSLVTFFLLAMEENRLFEIVNAQVLREGGKDDIIIVAKLAKRCLNLKGRNRPTMKEAAKDLEGIKRRKRDFSTKQNHEVVNNAFEDIILARDGSSSSNMSSLNTGR 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10756223 10758616 + Conep10aG0142300.1 Cone10ag1381 447179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1381 741 Gene3D Phosphorylase Kinase; domain 1 392 501 - -
Cone10ag1381 741 Gene3D Laminin 290 334 - -
Cone10ag1381 741 FunFam Wall-associated receptor kinase 2 396 501 - -
Cone10ag1381 741 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 31 707 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Cone10ag1381 741 SUPERFAMILY Protein kinase-like (PK-like) 403 697 IPR011009 -
Cone10ag1381 741 Gene3D Transferase(Phosphotransferase) domain 1 502 723 - -
Cone10ag1381 741 CDD STKc_IRAK 432 699 - -
Cone10ag1381 741 Pfam Protein kinase domain 426 694 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag1381 741 ProSiteProfiles Protein kinase domain profile. 426 715 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag1381 741 FunFam Wall-associated receptor kinase 2 502 718 - -
Cone10ag1381 741 ProSitePatterns Serine/Threonine protein kinases active-site signature. 547 559 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone10ag1381 741 SMART serkin_6 426 699 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag1381 741 Pfam Wall-associated receptor kinase galacturonan-binding 32 89 IPR025287 GO:0030247(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1381 Cone-Chr10:10756223 Cone10ag1388 Cone-Chr10:10819454 0 dispersed
Cone10ag1381 Cone-Chr10:10756223 Cone10ag1382 Cone-Chr10:10765041 5.18E-272 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81852 PF04117 Mpv17_PMP22 1.50E-16 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1381 - - - 0.0