Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1382 ATGGGTCGCATTATTTTTCTACTTTTGCTGATTACTCGATCATTTGCATTATCAAGAGAATTAACATCGACTCTAACAAGGTCTACCTCATGTAAAGGAAGTTGCGGAAAGGTTGTGATTCCATACCCGTTTGGAATCGGACCTGGTTGTTACTTGAACGAAAGCTATGCAGTAACATGTAAGGATGACGCCAAACCCTTCTTAACCAGCATCGACATGGAACTATTAGAAGTCTCAATGTTTGGTTATGTTCGGGTAAAGATCCCCATTTTTTATTCAAATTGCAGCATCCACAACAACAAGACCTCCATTTCAAGGAGTTTCAATATATCCGGCAGCCCTTTTTACTTTTCGGGCTCGGAGAATAGATTAACTGCCATGGGTTGTAATAACTTCGCACGATTGTCTTCTCCAGTTAACAATGCAACCATTAGCGGCTGCCTCTCTATCTGTAACGATGAGAAAGAAGGTAGTGTCGTAGAGGATGGTTGCTTTGGCATCAATTGTTGCGAGGCCAGCTTTCCAAACGATATCCAGTCTCTTACCATTAATCTCACAACAATTTCTGACGATAATTTCAAAGATCCTTATGGAATTGGGGGTGGATATTGTACGTACGCTTTTATCGTCGACAAGTACTGGTTCGAGAATGAAGCATCATATGGTAAGAATTTGATGGTTAATGATGATTCAAAAAATGTTCCTGCTGTGCTCGAGTGGACTGGCAATCCACAAGGTGTTTGTGATCTACCCAAAAATTCGAACACCTCTTGTGGCCACAACGATGCTTGGAATTATGATTATTGTTGGGCAGTGATGGACTCTACTCATCTTTGCTTTTGCTATAGCAACTCGGTTGACAGGTTCAGTCTCACTTCTTGGAGTTCACAAACATACATTTCAGAAGGATGCCAAGACAGTGCGGAATGCGAGGATCGAAGTAACTATACATGCTTGTTTATGTGCATATATTCACCTACTAGTCGAAACTGCACATGTCCGGATGGCTATAAACCACGACATGATGAAGATAACAGCTGGTGCATTCTACAAAATACTATTATTGACAAAGAAAGACACAGATCAAGGTTGAAAGCTGCGATTATAGGTTGTACTTCAGGTCCCGGACTACTATTTCTTGTAAGTGCTACCTGGATATTATACAAGCAAATCAAGAGAAGAAATGAACTCAAGTGCAAGCAGAAATTTTTTAAGAGAAATGGTGGTTTGTTGTTGCAACAACAACTGTCTACCTCTGAAAACAACATTAATAAAACCAAGTTATTTACTTCAGAGGAGTTGGAGAAAGCCACAAATCACTATCATGTGAATCGAATCCTTGGGCAAGGAGGTCAAGGAACTGTGTACAAAGGGATGTTGACAGATGGGCAAATTGTTGCTGTCAAAAGGTCGAGAAAAGTAGATGAAGCTAAACTTGGACATTTTATCAATGAGGTGACAATATTGTTACAAATTAATCACCGGAATGTGGTCAAGTTACTTGGATGTTGCTTGGAAACCGAAGTTCCTCTACTTGTTTATGAATTTATCCCAAATGGAACACTTTTCCAATACTTGCATGACCAAAATTCTGAATTCCCACTTACATGGGATAGGCGCTTAAGAATCGCCACGGAAGTTGCAAATGCTCTTTCTTACCTTCATTCAGCAGCCTCTATGCCCATTTATCATAGAGATATAAAGACCAGCAATATACTTTTGGATGAAAAATATAGAGCGAAGATCTCAGATTTTGGAACTTCAAGATCAATTGCAATTGACCAAACTCACTTGACGACCAATGTTCAAGGAACTTTTGGTTATTTGGACCCTGAGTATTTTCAATCTAGCCAATTCACTGAGAAAAGCGATGTTTACAGTTTTGGAGTCGTTCTGGTTGAGCTTCTAACTGGCCAAAAGCCAATAACTTTAATAAGCTCTGAAGAGCATAGAAGTTTAGCAGCATTTTTCCTACTCATAATGGAAGAAAATCGATTGCTAGAAATTCTCGACACTCGGGTTGTGATGGAAGCTGAGAAAGAAGAGATTGCCATAGTTGCTAAACTTGCCCAACGATGCCTAAACTTGCATGGGAAGAATAGGCCTTCAATGAAAGAAGTGGCTAAACAGTTAGAAGGGATTAAAGCATCACAGGAAGTTTCTTCCAGTAAACAAGATCATGAAGAGGTTTGTTACACGTCTGATGACATAATTAGGGCGTGGGACACTTCTTCGTCTACAAATATGTCATGTCTGAACACAAGCACCATCCGACATGAGGAATCTTAA 2289 39.84 MGRIIFLLLLITRSFALSRELTSTLTRSTSCKGSCGKVVIPYPFGIGPGCYLNESYAVTCKDDAKPFLTSIDMELLEVSMFGYVRVKIPIFYSNCSIHNNKTSISRSFNISGSPFYFSGSENRLTAMGCNNFARLSSPVNNATISGCLSICNDEKEGSVVEDGCFGINCCEASFPNDIQSLTINLTTISDDNFKDPYGIGGGYCTYAFIVDKYWFENEASYGKNLMVNDDSKNVPAVLEWTGNPQGVCDLPKNSNTSCGHNDAWNYDYCWAVMDSTHLCFCYSNSVDRFSLTSWSSQTYISEGCQDSAECEDRSNYTCLFMCIYSPTSRNCTCPDGYKPRHDEDNSWCILQNTIIDKERHRSRLKAAIIGCTSGPGLLFLVSATWILYKQIKRRNELKCKQKFFKRNGGLLLQQQLSTSENNINKTKLFTSEELEKATNHYHVNRILGQGGQGTVYKGMLTDGQIVAVKRSRKVDEAKLGHFINEVTILLQINHRNVVKLLGCCLETEVPLLVYEFIPNGTLFQYLHDQNSEFPLTWDRRLRIATEVANALSYLHSAASMPIYHRDIKTSNILLDEKYRAKISDFGTSRSIAIDQTHLTTNVQGTFGYLDPEYFQSSQFTEKSDVYSFGVVLVELLTGQKPITLISSEEHRSLAAFFLLIMEENRLLEILDTRVVMEAEKEEIAIVAKLAQRCLNLHGKNRPSMKEVAKQLEGIKASQEVSSSKQDHEEVCYTSDDIIRAWDTSSSTNMSCLNTSTIRHEES 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10765041 10781082 + Conep10aG0142400.1 Cone10ag1382 447180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1382 762 Pfam Protein kinase domain 441 709 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag1382 762 FunFam Wall-associated receptor kinase 2 517 734 - -
Cone10ag1382 762 Gene3D Transferase(Phosphotransferase) domain 1 517 739 - -
Cone10ag1382 762 SUPERFAMILY Protein kinase-like (PK-like) 424 719 IPR011009 -
Cone10ag1382 762 CDD STKc_IRAK 447 714 - -
Cone10ag1382 762 Gene3D Phosphorylase Kinase; domain 1 415 516 - -
Cone10ag1382 762 ProSiteProfiles Protein kinase domain profile. 441 714 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag1382 762 FunFam Wall-associated receptor kinase 2 411 516 - -
Cone10ag1382 762 Pfam Wall-associated receptor kinase galacturonan-binding 31 78 IPR025287 GO:0030247(InterPro)
Cone10ag1382 762 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 29 721 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Cone10ag1382 762 SMART serkin_6 441 720 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag1382 762 ProSitePatterns Serine/Threonine protein kinases active-site signature. 562 574 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1382 Cone-Chr10:10765041 Cone10ag1388 Cone-Chr10:10819454 5.35E-252 dispersed
Cone10ag1381 Cone-Chr10:10756223 Cone10ag1382 Cone-Chr10:10765041 5.18E-272 tandem
Cone10ag1382 Cone-Chr10:10765041 Cone10ag1383 Cone-Chr10:10791546 0 tandem
Cone3ag1334 Cone-Chr3:32306388 Cone10ag1382 Cone-Chr10:10765041 9.81E-48 transposed
Cone3ag1335 Cone-Chr3:32314200 Cone10ag1382 Cone-Chr10:10765041 2.53E-133 transposed
Cone10ag1382 Cone-Chr10:10765041 Cone5ag1569 Cone-Chr5:10950545 7.01E-40 wgd
Cone10ag1382 Cone-Chr10:10765041 Cone9ag0962 Cone-Chr9:4811402 2.77E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81853 PF12767 SAGA-Tad1 1.50E-18 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1382 - - - 0.0