Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1383 ATGGCGGGGTTTCATAATTTGGTCATTGCTAAATACATAATTTTGATATTTTGGGTAATTGCAATATCCAAATCACGGTCTCTAGCAAGAACTGGGTGTAGCAATAAGTGTGGAAATGTTTCGATTCCATACCCTTTTGGAATTGGACCGGATTGTTACATGAACGAGAGCTATGCGGTTACGTGCAAGGACGACTCCACGCCTTTCCTAACCAGCATGAATATGGAGCTATTAGGAGTCTCACTATTTGGTTATGTTCGTGTAAAGTATCCAGTTATTTATTCCAATTGTGGCATAGACAACAACATTAGCTCCCCTCTTACTACCGTCAATTTATCCAGCAGCCCTTTTTACTTTTCTGACACAGAGAATAGGTTCATAAGTTTGGGTTCTACAAATTTTGCTCGGATGCTTTTCCCATCTGACAGCAATAATTACACGACTACATGTGTTTCTATTCGTAAAAGTGATGGAACGAGTACTTGCGTTGATAACATTGTTGAAGGAAATGGTTGCCGTGGCATCAATTATTGCGAGACTACCTTTCCACCATCACTCCAGTCTCTTAAGGTCAACCTCACTACATCTTCTACTGATGATTTTAAGGTCAATCAAAGTTGCAGGTCAGTTTTCGTGGGAGAAAGGTCCCTGTTCGAGGATCGAACAACATCACTTGGTACGCCTATGGAGGTTTATGATACTACTAAAGAAAATTTTCCTGCTGTTTTTGAATGGTACCCTACATTTCAAGGGTATTGTGATCTAAGATCTGTAAGGAAAAGATCCAAGATGGAGAGTTTCTGTGGCGAAGAAAATTATTCGAAAAATACTTTTTGTTGGGCAAAGATGGACTCGAGTCATTTGTGTTTCTGCTTTGACTCGTATAGTCAGTTCGCTAATACCAGTACAACATACATTACAAAAGGATGTGAAGATAGGCAGGAATGCGATAATTCGAGATTAAGTTGTTATGTGATGTGTACAAATAAATCTGATAATCAAGATTGCTCGTGTCCTGATGGCTATGTACAAAGTGCTACTGACAGCGACTGGCCGTGCTTACCACGTCTCAACAAATCTCCGGTGAAATCTGCGATTGTAGGTAGTACTTCCTCTCTTGGACCATTAATTCTTCTGAGTGCTATATGGGTTTTACACAAGAAGATAAAAAGAAGAAATGAACTCAAGCTCAAACAGAAGTTTTTTAAAAGAAATGGTGGTCTATTGTTGCAACAACAAGTGTCTACTACTGAAAACACCATCAATGAAATCAAGTTATTTACTTCAGAAGAGTTGGAGAAGGCCACGGATCACTATCATGCAGATAGAATCCTCGGACAAGGAGGTCAAGGAACTGTCTACAAAGGGATGTTGACTGATGGGAAAATTGTTGCCGTCAAAAGGTCCAGAAAAGTAGATGAATCTAAACAGGCAAATTTTATCAATGAGGTGATAATTTTGTCACAAATTAATCACCGAAATGTGGTCAAGTTACATGGGTGCTGCTTGGAAACCGAAGTCCCTCTACTTGTTTATGAATTTATCCCAAATGGAACACTTTTCCAATACATACATGACCAAGATCAAGAATTCCCACTTACATGGGATAGGCGCTTAAGAATTGCCACAGAAATTGCAAATGCTCTTTCTTACCTTCATTCAGCTGCCTCTATGCCCATTTATCATAGAGATATAAAGACTAGTAACATACTTCTGGATGAAAAATATAGAGCGAAGGTCTCAGATTTTGGAACTTCAAGATCAATTGCAATTGACCAAACTCATTTGACGACCCATGTTCAAGGAACTTTTGGTTATTTAGATCCCGAGTACTTTCAGTCAAGTCAATTTACTGATAAAAGTGATGTTTACAGTTTTGGAGTAGTTCTCGTTGAGCTTTTAACTGGCCAAAAGCCAGTCACCTCAGTAAGCTCTGAAGAACATAGAAATCTAGCAGCATTTTTCCTCCTCGTAATGGAAGAAAATCGATTGCTTGAAATTCTTGACTCTCGAGTTGTAAGAGAAGGTGTTAAGGAAGAGATCGCAATCGTTGCTAAACTTGCCCATAGATGCCTAAACTTGCATGGGAAGAATAGGCCTACAATGAAAGAAGTGGCCAGAGAGCTAGAAGGGATTAAAATATCACAGGAAGTTTCTTCTAGTAACCAACATCACGAAGAGCTTTCTTACACTTCTGATGCTATAATTAGAGCATGGGACAATTCTTTTTCATCTTCTACATCATGTTTGAACACAGGTACCATCCAGCCATCTAATGAGAAACCTGTAGTTTCTTAA 2298 38.99 MAGFHNLVIAKYIILIFWVIAISKSRSLARTGCSNKCGNVSIPYPFGIGPDCYMNESYAVTCKDDSTPFLTSMNMELLGVSLFGYVRVKYPVIYSNCGIDNNISSPLTTVNLSSSPFYFSDTENRFISLGSTNFARMLFPSDSNNYTTTCVSIRKSDGTSTCVDNIVEGNGCRGINYCETTFPPSLQSLKVNLTTSSTDDFKVNQSCRSVFVGERSLFEDRTTSLGTPMEVYDTTKENFPAVFEWYPTFQGYCDLRSVRKRSKMESFCGEENYSKNTFCWAKMDSSHLCFCFDSYSQFANTSTTYITKGCEDRQECDNSRLSCYVMCTNKSDNQDCSCPDGYVQSATDSDWPCLPRLNKSPVKSAIVGSTSSLGPLILLSAIWVLHKKIKRRNELKLKQKFFKRNGGLLLQQQVSTTENTINEIKLFTSEELEKATDHYHADRILGQGGQGTVYKGMLTDGKIVAVKRSRKVDESKQANFINEVIILSQINHRNVVKLHGCCLETEVPLLVYEFIPNGTLFQYIHDQDQEFPLTWDRRLRIATEIANALSYLHSAASMPIYHRDIKTSNILLDEKYRAKVSDFGTSRSIAIDQTHLTTHVQGTFGYLDPEYFQSSQFTDKSDVYSFGVVLVELLTGQKPVTSVSSEEHRNLAAFFLLVMEENRLLEILDSRVVREGVKEEIAIVAKLAHRCLNLHGKNRPTMKEVARELEGIKISQEVSSSNQHHEELSYTSDAIIRAWDNSFSSSTSCLNTGTIQPSNEKPVVS 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10791546 10794393 + Conep10aG0142500.1 Cone10ag1383 447181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1383 765 FunFam Wall-associated receptor kinase 2 409 514 - -
Cone10ag1383 765 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 29 720 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Cone10ag1383 765 SUPERFAMILY Protein kinase-like (PK-like) 419 711 IPR011009 -
Cone10ag1383 765 Pfam Protein kinase domain 439 706 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag1383 765 Gene3D Transferase(Phosphotransferase) domain 1 515 737 - -
Cone10ag1383 765 ProSitePatterns Serine/Threonine protein kinases active-site signature. 560 572 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone10ag1383 765 CDD STKc_IRAK 445 712 - -
Cone10ag1383 765 SMART serkin_6 439 718 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag1383 765 ProSiteProfiles Protein kinase domain profile. 439 728 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag1383 765 FunFam Wall-associated receptor kinase 2 515 732 - -
Cone10ag1383 765 Gene3D Phosphorylase Kinase; domain 1 410 514 - -
Cone10ag1383 765 Pfam Wall-associated receptor kinase galacturonan-binding 33 77 IPR025287 GO:0030247(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1383 Cone-Chr10:10791546 Cone10ag1388 Cone-Chr10:10819454 3.35E-238 dispersed
Cone10ag1383 Cone-Chr10:10791546 Cone10ag1385 Cone-Chr10:10803785 9.61E-188 proximal
Cone10ag1382 Cone-Chr10:10765041 Cone10ag1383 Cone-Chr10:10791546 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81854 PF04484 QWRF 2.50E-116 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1383 - - - 0.0