Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1385 ATGTCTCAATATTCGGGTTCCGGCTATGTCGATTTGGGCCACAGGCCATTTAGCTTTTCAAGTTATTACAGTCGATTCACCATCGTGGGTTGCGAAATATACGGGACCATTATTTCGAACGAGAATAACAAAACACTTGGTGGGTGTTTTTCATCATGTGATAATTCTACAGTAGTATCATTGAGTGAAGATCAAAATGGTTGTTATGGTCTCAATTGCTGCCAAGCGGCTCTTCCAACATCATCAAATCTCAAATCTTTCAAAGCAAATATCATTTCAACACCGTCTCTCAAATCTGATCAAGTTTGTAGGGCTGCTTTCATGGTTGATCAACAGTGGTTTGAGCAACAACAGAATTCGTCAATAGATTCAATTCTCAACGAGACATCTGTTGTTCCCGCAGTTTTGGAGTGGGGGAAGACTGATGGGTCTTGTGCTTTGGATAATTATAGTCCAAACATCACTTTTTGTAGCTCAGATGGTTTTTGTTGGGCGATGATTGATTCAAGTTATTTATGTGTCTGCAATCCCAAGAGCTCTTTCAATTCTTTCCTCTCTAGTACTTCTTCCATCTCCTACATTTCAGGAGGCTGTGGAGGTACTTCTTCAATATTAAGTTGCCCGAGTCAAACATCATTCGGCTGTCAGCTTGTTTGTTTAGAGGATTCCCCGAATTGTTCATGTCCCAGTGACTATGAAAAACATGATACAGGGTGCTACCCACTAAAATTAATCATAGATCCGGTTGGCTTGGGGAATCGAGGTTCCTTTTTTTTATTAGTCCTGGGAGTGTTACTGCCTATTGCTATTTGGCTTTTATACAAGCTAATGAAAAAAAGAAAAGCAGTGAAACAAAGGCAGAAGTTCTTCAAAAGGAATGGTGGTTTGTTGTTGCAACAACAGTTGCTGACTTCCGATAACGGCATGGAGAAAACTAAGTTATTCACGTCTCGAGACTTGGAGAAGGCCACAGATAAGTATAATGTGGATCGAATTCTCGGGCAAGGAGGTCAAGGAATTGTTTACAAAGGGATGCTGAGAGATGGAAAGATCGTGGCCGTTAAGAAGTCTAAAGTAGTTGATGAAGCTCAACTTGGGCAATTTATTAATGAGGTGATGATTTTATCACAGATAGACCACAGAAATGTACTAAAGTTATTAGGATTCTGTTTGGAGACAGAAGTACCTATGTTAGTTTACGAGTTCATGCCAAATGGAACCCTTTATGAGTACATACATGATCAAAATGAAGAGCTTCCATTTACATGGGATATGCGCTTAAGAATTGCTACAGAAGTTGCCAATGCTCTTTCTTATCTCCATTCAGCAGCCTCTGCCCCCATTTATCATCGAGACATCAAATCTACTAACATACTTTTAGATGATAGATACCGAGCAAAAGTCTCAGACTTTGGAACTTCGAGATCAATTGCAATCGACAAAACTCACTTGACCACCAAAGTTAAGGGGACTTTTGGTTATTTGGATCCTGAGTATTTCCAATCGAGTTTATTCACGGAGAAAAGTGATGTTTATAGCTTCGGTGTTGTTCTTGTTGAACTCTTAACGGGACAAAAACCAATATCTTCAATAGGACATGAAGAATATAGAAATCTAGCAATGCTTTTTCACCAATCAATGGATGAGAATCGTTTGATTGAAATTCTCGACCCGCAAGTTATAAAGGACGGTGGGAAATTAAACGAGATCACTATAGTTTCTAACCTAGCTAAGAGATGCTTAAACATCCATGGCAGGTATAGACCTACAATGAAAGAAGTCGTCCAAGAGCTAGAAGGGATTAGAATGCCAGGAAGAGCTGCTGAACCAAATCATGAAGCGGATGGGTCTACTTTTGATTACATAAATAGGATATGGGACACTACGCCGTCTTCAACTGTCACGTTTTCGAGCAATGACTTCGAACAACCATTGGAAGAGGAAAAACGTTTAATTACTGGGACTCAATGA 1971 39.73 MSQYSGSGYVDLGHRPFSFSSYYSRFTIVGCEIYGTIISNENNKTLGGCFSSCDNSTVVSLSEDQNGCYGLNCCQAALPTSSNLKSFKANIISTPSLKSDQVCRAAFMVDQQWFEQQQNSSIDSILNETSVVPAVLEWGKTDGSCALDNYSPNITFCSSDGFCWAMIDSSYLCVCNPKSSFNSFLSSTSSISYISGGCGGTSSILSCPSQTSFGCQLVCLEDSPNCSCPSDYEKHDTGCYPLKLIIDPVGLGNRGSFFLLVLGVLLPIAIWLLYKLMKKRKAVKQRQKFFKRNGGLLLQQQLLTSDNGMEKTKLFTSRDLEKATDKYNVDRILGQGGQGIVYKGMLRDGKIVAVKKSKVVDEAQLGQFINEVMILSQIDHRNVLKLLGFCLETEVPMLVYEFMPNGTLYEYIHDQNEELPFTWDMRLRIATEVANALSYLHSAASAPIYHRDIKSTNILLDDRYRAKVSDFGTSRSIAIDKTHLTTKVKGTFGYLDPEYFQSSLFTEKSDVYSFGVVLVELLTGQKPISSIGHEEYRNLAMLFHQSMDENRLIEILDPQVIKDGGKLNEITIVSNLAKRCLNIHGRYRPTMKEVVQELEGIRMPGRAAEPNHEADGSTFDYINRIWDTTPSSTVTFSSNDFEQPLEEEKRLITGTQ 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10803785 10807352 - Conep10aG0142700.1 Cone10ag1385 447183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1385 656 FunFam Wall-associated receptor kinase 2 403 619 - -
Cone10ag1385 656 Gene3D Transferase(Phosphotransferase) domain 1 403 620 - -
Cone10ag1385 656 CDD STKc_IRAK 333 601 - -
Cone10ag1385 656 Pfam Protein tyrosine and serine/threonine kinase 329 598 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone10ag1385 656 SUPERFAMILY Protein kinase-like (PK-like) 310 599 IPR011009 -
Cone10ag1385 656 FunFam Wall-associated receptor kinase 2 297 402 - -
Cone10ag1385 656 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 13 613 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Cone10ag1385 656 ProSiteProfiles Protein kinase domain profile. 327 601 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag1385 656 Gene3D Phosphorylase Kinase; domain 1 299 402 - -
Cone10ag1385 656 SMART serkin_6 327 601 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag1385 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1385 Cone-Chr10:10803785 Cone7ag1497 Cone-Chr7:10467632 3.42E-126 dispersed
Cone10ag1383 Cone-Chr10:10791546 Cone10ag1385 Cone-Chr10:10803785 9.61E-188 proximal
Cone10ag1385 Cone-Chr10:10803785 Cone10ag1388 Cone-Chr10:10819454 1.91E-194 proximal
Cone10ag1385 Cone-Chr10:10803785 Cone5ag1654 Cone-Chr5:11717761 3.97E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81855 PF00010 HLH 1.10E-08 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1385 - - - 0.0