Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1388 ATGAGGAAGAGGATGTCGGCTTTTCGGCTGGTGAGTCGTTACATGATTTCCATTTTATGGCTAATTACCAAAGTTTTACCATCAGTACTATCCGATCTAGACAGCGGCGTATGTACTCGAAAGTGTGGAAATGTTACAATTCCATACCCCTTCGGAATTCAACCAGGCTGTTACCTAAACAGCAGCTATGCAATAACATGTGTTAGCGATTCCTCGTCCGGCACTCAAAAAGCCTTTCTAAAGAGCCTCAACAATTCGATGGAAGTAACACATATCTCACTCTGGGGAAATATTCGTGTAAGAAATCCAGTTATCTCTTCCAATTGTAGCACCAATTACACCTCTCCTTTGGGTGTTGATTTGTCAAGCTCCCCTTTCTACTTTTCGGATACCTACAATAGATTCACAGCTTTGGGGTGTAGCAATATCGCCATATTTACCGATAAGTACAAATCAACTCTCAGTGGGTGCCTTTCAATTTGCTCGGAAGGACCGAATATTAAAGGTTGTAACGGTATCAATTGTTGCCAAACCACAATTCCACCTGATCTCAAGTCCTTTGATGCAAACATGACAACAATTGATACTAATATTCGAAGCGAAAGAGGAGATTGTAGGCAGGCTTTTATGGTGGAACAAGAGTGGTTTGAAGAGGAAGCATCTATCGATATGAAAATAGGCAACGGCCAAGAAAATGTTCCTGCGGTCTTGGAGTATGGTCAAGATCAAGGATATTGTAGTATAGTCAATATATTCAGAACTTATTGTGGGTATGACCGTCAGGGTTATACATATCATTGGGGCAAGGTAGACTCGAATCATTTATGTGTTTGCAGTGATTTGTATACGGGTGGTTCATCTAATTCCATTTCAGTTTCTCGGTCTTCTATATCATCCACATATAGAGTTTGTTTATATTCACCACAAAGCAAGAATTGCTCATGTCCGTACGGTTATGATGCTCAGAGCTCATTTGACCAACAACCGCACTGCTCTCCGGCGGATACGGTGTTTCCTCCGAGTCCATTTCGTTCGAGTCCGTTTCCTCCGAGTCTGTTTCCTCCGAGTCCGGGAAATAACAAAAGAGTTGTGACTATAGGCTCCGCTTCTGGTTCAGGACTACCAATCATCCTAATAATTACTTGGTTTTTATGCAAGTACATTATTAAGAAGAAAGAAGAAAAACAAAAGCAAAAATTCTTTAAAAGAAATGGTGGTCTATTGTTACAACAAGAATTATCTTCCAACCAAAACAGTATTGACAAAACAAAGTTATTCACTTCCAAAGAGTTGGAGAAAGCTACAGATCATTACAATGTGACCAGAATCCTTGGTCAAGGAGGTCAAGGAACTGTTTATAAGGGTATGTTAACAGATGGAAGAATTGTTGCTGTCAAGAAGTCTAAAATAGTTCGCGAAGCAGAACTTGGGCATTTCATCAATGAGGTCGTAATTTTATCACAAATTAATCATAGAAATGTCGTCAAGTTACTTGGTTGCTGTTTGGAAACTGATGTTCCTCTGTTAGTTTACGAGTTTATCCCAAATGGAACCCTCTTTGATTACATCCATTACCAAAATGAAGAATTCCCACTCACATGGGTTATACGTTTGAGAATTGCAACAGAAGTTTCAAATGCTCTCTCTTATCTTCATTCGGCAGCCTCCACTCCCATTTACCATCGTGATATTAAGTCTACGAACATTCTTCTCGACGAAAAGTATAGAGCAAAAGTCTCGGACTTTGGAACTTCAAGATCAATAGCGATTGACCAAACTCACTTGACAACTAATGTTGCTGGAACTTTTGGTTACTTGGACCCAGAGTACTTTCAATCAAGTCAGTTCACTGACAAAAGTGATGTCTACAGTTTCGGGGTCGTTTTGGTTGAGCTTCTAACTAGTCAAAAGGCGGTCTCTTCAATGAGATCAGTAGAAAATAGAAGCTTAGCAACATTTTTCCTTGTTTCAATGGAGGAAAATCGTTTGTTCGAAATTGTTGATCCTCAAGTTATAAAAGATGGTGGGAAAGACGAGATTACAATAGTTGCGAAACTTGCCAAAAGATGCCTAAGCTTGAATGGAAGAAGTAGACCTACAATGAAAGATGTGGCCAAGGAGCGAGAAGGGATTAAAATGATAAAACGAGATGTCTCAATTAAGCAAAATCAAGAATTGGTCAACTATGCTTTTGATGATATAGTTCAAGCGTGGGATGGTTCTTCATGTTCAAATATGTCGTCTCTGAACACTGGTAGATGA 2262 39.57 MRKRMSAFRLVSRYMISILWLITKVLPSVLSDLDSGVCTRKCGNVTIPYPFGIQPGCYLNSSYAITCVSDSSSGTQKAFLKSLNNSMEVTHISLWGNIRVRNPVISSNCSTNYTSPLGVDLSSSPFYFSDTYNRFTALGCSNIAIFTDKYKSTLSGCLSICSEGPNIKGCNGINCCQTTIPPDLKSFDANMTTIDTNIRSERGDCRQAFMVEQEWFEEEASIDMKIGNGQENVPAVLEYGQDQGYCSIVNIFRTYCGYDRQGYTYHWGKVDSNHLCVCSDLYTGGSSNSISVSRSSISSTYRVCLYSPQSKNCSCPYGYDAQSSFDQQPHCSPADTVFPPSPFRSSPFPPSLFPPSPGNNKRVVTIGSASGSGLPIILIITWFLCKYIIKKKEEKQKQKFFKRNGGLLLQQELSSNQNSIDKTKLFTSKELEKATDHYNVTRILGQGGQGTVYKGMLTDGRIVAVKKSKIVREAELGHFINEVVILSQINHRNVVKLLGCCLETDVPLLVYEFIPNGTLFDYIHYQNEEFPLTWVIRLRIATEVSNALSYLHSAASTPIYHRDIKSTNILLDEKYRAKVSDFGTSRSIAIDQTHLTTNVAGTFGYLDPEYFQSSQFTDKSDVYSFGVVLVELLTSQKAVSSMRSVENRSLATFFLVSMEENRLFEIVDPQVIKDGGKDEITIVAKLAKRCLSLNGRSRPTMKDVAKEREGIKMIKRDVSIKQNQELVNYAFDDIVQAWDGSSCSNMSSLNTGR 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10819454 10822724 - Conep10aG0143000.1 Cone10ag1388 447186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1388 753 Gene3D Transferase(Phosphotransferase) domain 1 514 735 - -
Cone10ag1388 753 Pfam Protein kinase domain 438 706 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag1388 753 FunFam Wall-associated receptor kinase 2 514 730 - -
Cone10ag1388 753 SUPERFAMILY Protein kinase-like (PK-like) 416 707 IPR011009 -
Cone10ag1388 753 CDD STKc_IRAK 444 711 - -
Cone10ag1388 753 ProSitePatterns Serine/Threonine protein kinases active-site signature. 559 571 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone10ag1388 753 ProSiteProfiles Protein kinase domain profile. 438 711 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag1388 753 Pfam Wall-associated kinase 169 221 IPR013695 GO:0004674(InterPro)|GO:0016020(InterPro)
Cone10ag1388 753 Gene3D Phosphorylase Kinase; domain 1 409 513 - -
Cone10ag1388 753 FunFam Wall-associated receptor kinase 2 408 513 - -
Cone10ag1388 753 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 38 712 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Cone10ag1388 753 SMART serkin_6 438 711 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag1388 753 Pfam Wall-associated receptor kinase galacturonan-binding 38 96 IPR025287 GO:0030247(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1381 Cone-Chr10:10756223 Cone10ag1388 Cone-Chr10:10819454 0 dispersed
Cone10ag1382 Cone-Chr10:10765041 Cone10ag1388 Cone-Chr10:10819454 5.35E-252 dispersed
Cone10ag1383 Cone-Chr10:10791546 Cone10ag1388 Cone-Chr10:10819454 3.35E-238 dispersed
Cone10ag1388 Cone-Chr10:10819454 Cone7ag1498 Cone-Chr7:10473344 2.91E-140 dispersed
Cone3ag1334 Cone-Chr3:32306388 Cone10ag1388 Cone-Chr10:10819454 4.69E-53 dispersed
Cone10ag1385 Cone-Chr10:10803785 Cone10ag1388 Cone-Chr10:10819454 1.91E-194 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81856 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1388 - - - 0.0