Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1396 ATGTGCAGGACGATCGAAGTGGATGCAATCGAGCACCACCACCACCACCACAGGAATCGGAGCTTTTCGCTGTCCGCTGAGGTGGAGGACGGTGAAGATTGCAACACGGATGTTGAGGAGGACGGCCTCTTCGTTCCTCCACTTAACTTTGCAATGGTTGACAAAGGCATTTTTCGCTCTGGTTTTCCTGATTCTGCTAACTTATCCTTCTTACAAACTCTAGGCCTCCGCTCCGTAATATATCTGTGTCCGGAGCCCTATCCGGAGGTAAACATGGAGTTCCTCAAGTCGAATGGGATAAGGCTCTATCAATTTGGGATTGAAGGCTATAAGGAGCCTTTTGTGAATATGCCTGAGGCTACAATCCTTGAAGCACTGAAAATTCTCCTCGATGTAAGGAATCATCCGGTTCTAATACATTGTAATAGAGGAAAGCATCGAACTGGTTGTCTTGTCGGATGCTTGAGAAAATTGCAAAGATGGGGTCTCTCATCTATTTTCGATGAGTACCGGAAATTTGCTGCTGCCAAAGCCAGAGTCTCTGACCAAAGGTTTATGGAGTTGTTTGATATCTCTAGCTTAAAGCATCTACCAATGTCATTTTCATTCTCCAAGAGGTAA 621 45.41 MCRTIEVDAIEHHHHHHRNRSFSLSAEVEDGEDCNTDVEEDGLFVPPLNFAMVDKGIFRSGFPDSANLSFLQTLGLRSVIYLCPEPYPEVNMEFLKSNGIRLYQFGIEGYKEPFVNMPEATILEALKILLDVRNHPVLIHCNRGKHRTGCLVGCLRKLQRWGLSSIFDEYRKFAAAKARVSDQRFMELFDISSLKHLPMSFSFSKR 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10862174 10865153 - Conep10aG0143800.1 Cone10ag1396 447194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1396 206 PRINTS Plant and fungal dual specificity phosphatase signature 81 94 IPR020428 GO:0016791(InterPro)
Cone10ag1396 206 PRINTS Plant and fungal dual specificity phosphatase signature 44 61 IPR020428 GO:0016791(InterPro)
Cone10ag1396 206 PRINTS Plant and fungal dual specificity phosphatase signature 117 131 IPR020428 GO:0016791(InterPro)
Cone10ag1396 206 PRINTS Plant and fungal dual specificity phosphatase signature 100 114 IPR020428 GO:0016791(InterPro)
Cone10ag1396 206 FunFam probable tyrosine-protein phosphatase At1g05000 43 193 - -
Cone10ag1396 206 ProSitePatterns Tyrosine specific protein phosphatases active site. 139 149 IPR016130 GO:0016311(InterPro)
Cone10ag1396 206 Gene3D Protein tyrosine phosphatase superfamily 43 193 IPR029021 -
Cone10ag1396 206 ProSiteProfiles Dual specificity protein phosphatase domain profile. 49 203 IPR020422 GO:0006470(InterPro)
Cone10ag1396 206 PANTHER TYROSINE-PROTEIN PHOSPHATASE 25 199 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Cone10ag1396 206 Pfam Tyrosine phosphatase family 45 196 IPR004861 -
Cone10ag1396 206 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 44 191 IPR029021 -
Cone10ag1396 206 CDD PFA-DSP_Siw14 43 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1396 Cone-Chr10:10862174 Cone5ag1838 Cone-Chr5:12920068 1.17E-95 dispersed
Cone10ag1396 Cone-Chr10:10862174 Cone12ag1505 Cone-Chr12:10695053 5.03E-108 wgd
Cone10ag1396 Cone-Chr10:10862174 Cone8ag1552 Cone-Chr8:11633645 1.32E-100 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1396 K18045 - vvi:100251662 305.064