Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1398 ATGCCAGATAATCGGCAAGTTCAGAAGAATGCTGGCGTTTCAATTCAGTCCGGTAGTAACATTGAAGATACATTTTGGCGACTGAAAATTAATGACAATCAGGAAGTAAATGATGCGGCTCAATTGGGCCCATACCCAGATCGGCCTGGTGAACCTGATTGCTTACACTATGTGAGAACTGGGATCTGTCGCTACGGAAATAATTGTCGATATAATCATCCTGTCTATGTTTCAGCGGGTGTTCAATACAATGGGGAACTTCCGGAGAGAGTTGGGCAACCTGATTGTGAGTATTTTCTGAAGACTGGAACTTGTAAATATGGATCATCATGTAAATATCATCACCCAAGAGACAGGCGTGGAGCTGGACCGGTCACATTTAACATTATAGGATTACCAATGCGTCAGGAAGAGAAACCATGTCCTTTTTATATGAGAACTGGAGCGTGTAAGTTTGGAGTTGCATGTAAGTTCCACCATCCCCAGCCTGCATCGTTCGGAACAATGTTGCCTGGGGCTGCTGCTTTTGGTTCTACTGGATTTATGCCTTCCTCTGGTGTGCCTTACTTGGGCGGAGCTCCATCATGGTCATTACCAAGAGGGCCATACATGACGGGCTCAAATTTACAAGGTCAACAATCTTACATGCCTGTTCTTCTCTCTCCATCTCAGGGAGCCATACCTACACAGGGCTGGAACACTTACATGGGAAACTTGAGTCCATTACCTTCTCCATCTGTTCTAGGGCCAAATTTCATTTACAACTCGAAGAACCTCCTTGGTGTGTCGGGCTCTAGTAGGCAGGGAAATCTATTATCAACATCCAATCTCTCTCTTCCTCAGAGGCCCGATCAGCCTGAATGTCGTTTTTTTATAAACAATGGTACTTGTAAATATGGATCTGATTGCAAGTTTCATCATCCCAAAGATAGGATGCCACAAGCAATGACAAATGCTCTCGGGCTTCCCTCAAGACCTGGGCAAGCTGTATGTTCATACTACAGTGTCTATGGACTCTGCAAATACGGCCCAAACTGTAAATTTGATCACCCCTTTTTGATACATCCTCCTTATAACTATGGTTTGGGTATACCTGCTCTATCGATGCTAGATTCATCTTTAAGTTATCATCCAACTGTACCCATATCTGCAACATTACCCAAATCTTCTGAATGGATCGAAAACCCCAATTCTATGACGAACCATCAAAACTCAAATACCAAGTACCCAGAAGAAGACCCCATTGAAGAAGAGGCTACTACTTCTCCATCACCTTCATTACCTGCCGCTTCAGAATCTTCACTAGATCACTCTCCTTGA 1320 43.86 MPDNRQVQKNAGVSIQSGSNIEDTFWRLKINDNQEVNDAAQLGPYPDRPGEPDCLHYVRTGICRYGNNCRYNHPVYVSAGVQYNGELPERVGQPDCEYFLKTGTCKYGSSCKYHHPRDRRGAGPVTFNIIGLPMRQEEKPCPFYMRTGACKFGVACKFHHPQPASFGTMLPGAAAFGSTGFMPSSGVPYLGGAPSWSLPRGPYMTGSNLQGQQSYMPVLLSPSQGAIPTQGWNTYMGNLSPLPSPSVLGPNFIYNSKNLLGVSGSSRQGNLLSTSNLSLPQRPDQPECRFFINNGTCKYGSDCKFHHPKDRMPQAMTNALGLPSRPGQAVCSYYSVYGLCKYGPNCKFDHPFLIHPPYNYGLGIPALSMLDSSLSYHPTVPISATLPKSSEWIENPNSMTNHQNSNTKYPEEDPIEEEATTSPSPSLPAASESSLDHSP 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10881579 10885123 + Conep10aG0144000.1 Cone10ag1398 447196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1398 439 MobiDBLite consensus disorder prediction 393 439 - -
Cone10ag1398 439 ProSiteProfiles Zinc finger C3H1-type profile. 90 118 IPR000571 GO:0046872(InterPro)
Cone10ag1398 439 MobiDBLite consensus disorder prediction 419 439 - -
Cone10ag1398 439 ProSiteProfiles Zinc finger C3H1-type profile. 135 163 IPR000571 GO:0046872(InterPro)
Cone10ag1398 439 Gene3D - 47 119 - -
Cone10ag1398 439 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872(InterPro)
Cone10ag1398 439 ProSiteProfiles Zinc finger C3H1-type profile. 325 353 IPR000571 GO:0046872(InterPro)
Cone10ag1398 439 SUPERFAMILY CCCH zinc finger 325 351 IPR036855 GO:0046872(InterPro)
Cone10ag1398 439 SUPERFAMILY CCCH zinc finger 134 163 IPR036855 GO:0046872(InterPro)
Cone10ag1398 439 SMART c3hfinal6 137 162 IPR000571 GO:0046872(InterPro)
Cone10ag1398 439 SMART c3hfinal6 90 117 IPR000571 GO:0046872(InterPro)
Cone10ag1398 439 SMART c3hfinal6 48 75 IPR000571 GO:0046872(InterPro)
Cone10ag1398 439 SMART c3hfinal6 325 352 IPR000571 GO:0046872(InterPro)
Cone10ag1398 439 SMART c3hfinal6 282 309 IPR000571 GO:0046872(InterPro)
Cone10ag1398 439 MobiDBLite consensus disorder prediction 393 408 - -
Cone10ag1398 439 PANTHER PROTEIN PHOSPHATASE RELATED 10 353 IPR050974 GO:0003729(PANTHER)
Cone10ag1398 439 SUPERFAMILY CCCH zinc finger 94 119 IPR036855 GO:0046872(InterPro)
Cone10ag1398 439 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 74 IPR000571 GO:0046872(InterPro)
Cone10ag1398 439 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 162 IPR000571 GO:0046872(InterPro)
Cone10ag1398 439 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 284 309 IPR000571 GO:0046872(InterPro)
Cone10ag1398 439 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 327 351 IPR000571 GO:0046872(InterPro)
Cone10ag1398 439 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 93 117 IPR000571 GO:0046872(InterPro)
Cone10ag1398 439 Gene3D - 276 354 - -
Cone10ag1398 439 SUPERFAMILY CCCH zinc finger 284 311 IPR036855 GO:0046872(InterPro)
Cone10ag1398 439 ProSiteProfiles Zinc finger C3H1-type profile. 282 310 IPR000571 GO:0046872(InterPro)
Cone10ag1398 439 SUPERFAMILY CCCH zinc finger 53 75 IPR036855 GO:0046872(InterPro)
Cone10ag1398 439 Gene3D - 120 171 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1398 Cone-Chr10:10881579 Cone5ag0933 Cone-Chr5:3992290 2.62E-31 dispersed
Cone10ag1398 Cone-Chr10:10881579 Cone12ag1507 Cone-Chr12:10710518 3.11E-111 wgd
Cone10ag1398 Cone-Chr10:10881579 Cone3ag1462 Cone-Chr3:33273405 2.06E-165 wgd
Cone10ag1398 Cone-Chr10:10881579 Cone8ag1553 Cone-Chr8:11644733 2.26E-123 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44264 PF00134 Cyclin_N 4.60E-28 CL0065 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1398 - - - 0.0