Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1399 ATGCGGCGAGGCAGAGCGACAGATCTGTCAACTCCAAAATCAAGCATCGAACCTAAAAATCCAGTCAAGGAAATTAGATATAGAGGCGTCAGGAAGCGTCCTTGGGGCCGATACGCCGCGGAAATCAGAGATCCGTTGAGAAAGACTCGGATCTGGCTTGGCACTTTCGATTCCGCCGAGGAGGCCGCTAGGGCTTACGATTCTGCCGCTAGATCTCTCCGAGGTCCGAAGGCGAAGGCGAACTTTCCTTTTCATCATCCATCGACGATCGCTCTTCAACAGCAGTTTCCGTTATACCATCATCAATCGCAGGAGTTTTATCCCCACAATTCTTCTAATGGATTTGTCAAGATTAATGGTGCTCATGTTAATCGGCCTACGTCGAGTAGCTTGAGCTCAACCGTGGAGTCGTTTAGCGGACCTCGGGTCTCGAATCCCCTTCTGACGCTACCTAAGGTTCGTCGGAGACCTGTGCCGACGGTTCAACCCGATGATTGTCATAGCGACTGTGATTCTTCTTCATCTGTTGTTGATGATAAAGAGGATTGCGTGCTTACTTCTTTTTTCCGTAAAGTATTGCCCTTCGACCTTAATCTTCCACCTCCAATTGAAGGATTCGATTTTTCCGGTGAGGATCTTCAAGCCACCGCTTTGTGCCTCTGA 663 49.17 MRRGRATDLSTPKSSIEPKNPVKEIRYRGVRKRPWGRYAAEIRDPLRKTRIWLGTFDSAEEAARAYDSAARSLRGPKAKANFPFHHPSTIALQQQFPLYHHQSQEFYPHNSSNGFVKINGAHVNRPTSSSLSSTVESFSGPRVSNPLLTLPKVRRRPVPTVQPDDCHSDCDSSSSVVDDKEDCVLTSFFRKVLPFDLNLPPPIEGFDFSGEDLQATALCL 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10886244 10887600 + Conep10aG0144100.1 Cone10ag1399 447197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1399 220 MobiDBLite consensus disorder prediction 1 21 - -
Cone10ag1399 220 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677(InterPro)
Cone10ag1399 220 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 14 183 - -
Cone10ag1399 220 CDD AP2 26 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone10ag1399 220 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone10ag1399 220 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone10ag1399 220 FunFam Ethylene-responsive transcription factor 2 26 85 - -
Cone10ag1399 220 Gene3D AP2/ERF domain 25 85 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone10ag1399 220 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone10ag1399 220 Pfam AP2 domain 26 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone10ag1399 220 SMART rav1_2 26 89 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1399 K09286 - - csv:101221703 265.774
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1399 Cone-Chr10:10886244 Cone14ag1170 Cone-Chr14:9624721 1.67E-59 dispersed
Cone10ag1399 Cone-Chr10:10886244 Cone12ag1508 Cone-Chr12:10715136 7.05E-97 wgd
Cone10ag1399 Cone-Chr10:10886244 Cone3ag1463 Cone-Chr3:33278845 3.02E-145 wgd
Cone10ag1399 Cone-Chr10:10886244 Cone8ag1554 Cone-Chr8:11648898 5.14E-97 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g564 . . . . Bpe09g00157 . Bma10g00572 Bma13g01075 Cmo16g00944 . . . . . . . . . . . . . . . Cla10g00484 Cam10g0471 Cec10g0491 Cco10g0478 Clacu10g0490 Cmu10g1318 Cre10g0724 . Cone10ag1399 Cone8ag1554 Cone12ag1475 . Csa03g00483 . Cme06g02844 Blo07g00887 . Bda05g00702 Bda12g00930 . Bpe03g00777 . . . . . . Cma16g00908 . Car16g00883 . . Bhi11g00585 Tan01g1742 Cmetu06g0936 . Hepe06g0015 . . . . . . . . . Lsi05g00571 . Chy06g01839 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001599 4 2 1 1 3 2 4 1 2 2 2 2 4 2 2 3 2 4 4 2 2 2 2 2 2 2 2 4 2 1 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44265 None None None None Cone TF