Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1407 ATGGGAGCTGATTACGTATTCACGAAGGTCCTTCTACTTCTTCTTCTTCATCTTCATCTCCTCTGTCTCGCTACCTTGCTTTTCTCTGCAACTTTAGGATCAGCAGCCATAACTAAGCTTCCCGAATACGAAGTGGAAGCATTGAGAGAGATAGGGAGTAAATTGGGTAAGGATTGGGATTTTGAGAAAGATCCGTGCAGTGGAGAAGGGAATTGGAGAATTGAAGATGATAGCAGGAAAGGATTTGAAGGCAATGTCAGCTGTGAATGCTCCTCCTCCTCCAACCTCAATTCCACCACCACTTGCCATGTTGTCACCATAGCTCTGAAGTCCCAGAATCTAACTGGAATTGTCCCACCTGAGTTTTCCCAGCTACGCCACCTCAGATTACTTGATCTTAGTCGAAACCTGCTCACTGGGTCTATCCCTAATCAATGGGCTACCATGCAGTTGGGCGAACTCTCTCTAATGGGGAACAGATTGTCTGGTCCATTCCCAAAAGTTCTCACCAAAATTACCACCCTCAGAAACCTGAGCATCGAAGGAAACCTTTTTTTCGGACTGATTCCGCCAGAGATTGGGAATTTGATTAATTTAGAAAAGCTGATTATATCATCAAATTCTTTCACAGGAGAATTGCCTGTCGCACTTGCCAAATTGATCAACTTAGATGATATGAGGATAAGCGACAACAATTTCTCTGGAAAGATACCTTATTTCATCAGTAATTGGACAACAATTGGAAAACTGCATATGGGTGGTTGCTCTCTTGAAGGGCCCATACCTTCAAGCATTGCAGCATTAACTAGCCTTACCGATCTGAGGATAACTGACCTTAAAGGTGGAAAGTCAAGTTTCCCACCATTGAGTAATATGAAATCCATAAAGACATTGATATTGAGGAAGTGCAATATCCATGGAGAGATTCCCTCCTATATTGGGTATATGGATAAACTAAAAAACCTAGACCTCAGCTTTAACAACTTAACTGGTAAGATTCCTGGATCTTTTGAAGGGTCGAGTAAATTAGAATTCCTGTATTTGACAGCGAACAAGCTAACAGGATCTGTACCTAGATGGAGCCAAGAAAGAAGCAAACAAGCGGATCTCTCTTATAATAATTTCACTTGGGATAGCTCAGGTCCTACTGACTGTTCTGTGGGTAGTGTGAACATGGTGGAGAGCTACTCTTCTTCAAACGAAATAAAAATAGGTTCCTGCTTAAAAAGGAATTATCCATGTAATGCACTTGGTGGTCCGAAACATTACTCCGTATACATCAACTGTGGTGGCAAAGAAATAGTTATTAACAATACAAAGTATGAAGCCGATGAAGACCATATAGGTGCTGCAATGTTTTACTCGAATGAGAAATGGGCAGTCACCAGCACAGGGAACTTTATGGACGATGATGCCTTTTCAGACAGATACATCATAAGCAATACATCTGCATTGAAAAATGTATCCAGGTTCTACTCGGAACTGTACAGAAGTGGACGAGTTTCTCCCTTCTCTCTCACATACTATGGACTGTGTCTAATCAATAATAATTACACTGTTCGACTCCACTTTGCCGAGATTTTATTCATAAACGACAGTTCATTGAACAGCCTTGGGAGACGTATATTTGACGTGTACATCCAGGATGAATTGGTCCTGAAAGATTTCAATATAGAAGATGAAGCTGGTGGTACTGGTATGCCCATTGTCAAAACATTCCCCATTACCGTGACTAGTCATACTTTGAAGATCCACTTTTACTGGGCTGGAAAAGGGACTACCGGAATTCCACTTCGCGGAAATTACGGTCCACTAATATCAGCTATATCAGTAGACCCTAATTTTAAGCCTCCATCGGATGATGGAAAGAAGAAAAATGTGGTGATAGTTATTGGGTCGGTGGCTACAGCATTTTTTATTGGCCTGGGGATCCTCGCTATCATGAGTTATAAAGGCTGTCTAGGAGGCAAAGCCTCTACAGATAAAGAACTTAGAGGAATAGATCTGCAAACAGGACTGTTTACATTGAGACAGATCAAGACTGCCACGAAGAATTTTGATGCCGCAAACAAAGTTGGAGAAGGTGGTTTTGGTGCTGTTTATAAGGGCCTCTTATCAGATGGCACGGTGATTGCAGTAAAGCAACTCTCTTCAAAATCGAAGCAAGGAAACCGAGAATTCTTGAATGAAATAGGCATGATATCTGCTCTACAACATCCAAATCTAGTTAAGCTTTATGGGTGTTGTGTTGAAGGGAACCAGTTAATACTCATCTACGAATACATGGAAAACAACTGCCTATCACGTGCTCTTTTCGGGAAGGATCAAATATGTAGAGTGAAACTGGACTGGCCTACAAGGCAGAAAATCTGCTTAGGTATAGCCAAAGGCTTGGCCTATCTCCATGAAGAATCCAGTATAAAAATTGTTCATAGAGATATCAAGACAAGTAATGTGTTACTTGACAAGGATTTCAATGCTAAGATTTCTGATTTCGGTTTGGCTAAGCTGAATGAAGATGACAATACCCACATCAGCACCCGTATTGCCGGAACTATAGGTTACATAGCTCCAGAATATGCAATGCGTGGTTACTTGACGAACAAAGCTGATGTGTATAGCTTCGGAGTTGTCGCATTGGAAATTGTCAGTGGAAAGAGCAACACAAATTACAAGCCTAAGGAAGACTTCGTCTACCTTCTCGATTGGGCTTATGTTTTGCAAGAGAGAGGGAGTTTACTGGAGTTGATAGATCCATCATTGGGTTCAGAATATTCATCACAAGAAGCAATGGTGATGCTAAATGTAGCTCTCTTATGCACCAATGCATCTCCTACACTTAGGCCTACTATGTCCCAAGTAGTAAGCATGCTTGAAGGCAGAACTTCGGTTTGGGATTTACTTTCTGATCCGGGATTTTCAGCCGTTACTTCCGAATACAAAGCCATAAGGAACCATTTTTGGCAGCAACCGAGGCGGACTCAAAGTATGTCACTGAACGGTTATGATCTTCCTACGGATTCATCAGAATCTTATACTGAAACTCAAGTGAAAGACCATCTTTTGAGAGTCAGTTTGGTTGAATCTGAGGAGTTAAATATACTCCATGTTTAA 3114 41.39 MGADYVFTKVLLLLLLHLHLLCLATLLFSATLGSAAITKLPEYEVEALREIGSKLGKDWDFEKDPCSGEGNWRIEDDSRKGFEGNVSCECSSSSNLNSTTTCHVVTIALKSQNLTGIVPPEFSQLRHLRLLDLSRNLLTGSIPNQWATMQLGELSLMGNRLSGPFPKVLTKITTLRNLSIEGNLFFGLIPPEIGNLINLEKLIISSNSFTGELPVALAKLINLDDMRISDNNFSGKIPYFISNWTTIGKLHMGGCSLEGPIPSSIAALTSLTDLRITDLKGGKSSFPPLSNMKSIKTLILRKCNIHGEIPSYIGYMDKLKNLDLSFNNLTGKIPGSFEGSSKLEFLYLTANKLTGSVPRWSQERSKQADLSYNNFTWDSSGPTDCSVGSVNMVESYSSSNEIKIGSCLKRNYPCNALGGPKHYSVYINCGGKEIVINNTKYEADEDHIGAAMFYSNEKWAVTSTGNFMDDDAFSDRYIISNTSALKNVSRFYSELYRSGRVSPFSLTYYGLCLINNNYTVRLHFAEILFINDSSLNSLGRRIFDVYIQDELVLKDFNIEDEAGGTGMPIVKTFPITVTSHTLKIHFYWAGKGTTGIPLRGNYGPLISAISVDPNFKPPSDDGKKKNVVIVIGSVATAFFIGLGILAIMSYKGCLGGKASTDKELRGIDLQTGLFTLRQIKTATKNFDAANKVGEGGFGAVYKGLLSDGTVIAVKQLSSKSKQGNREFLNEIGMISALQHPNLVKLYGCCVEGNQLILIYEYMENNCLSRALFGKDQICRVKLDWPTRQKICLGIAKGLAYLHEESSIKIVHRDIKTSNVLLDKDFNAKISDFGLAKLNEDDNTHISTRIAGTIGYIAPEYAMRGYLTNKADVYSFGVVALEIVSGKSNTNYKPKEDFVYLLDWAYVLQERGSLLELIDPSLGSEYSSQEAMVMLNVALLCTNASPTLRPTMSQVVSMLEGRTSVWDLLSDPGFSAVTSEYKAIRNHFWQQPRRTQSMSLNGYDLPTDSSESYTETQVKDHLLRVSLVESEELNILHV 1037
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10929164 10936158 + Conep10aG0144900.1 Cone10ag1407 447205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1407 1037 SUPERFAMILY Protein kinase-like (PK-like) 671 962 IPR011009 -
Cone10ag1407 1037 Pfam Leucine Rich Repeat 175 196 IPR001611 GO:0005515(InterPro)
Cone10ag1407 1037 Pfam Leucine Rich Repeat 198 220 IPR001611 GO:0005515(InterPro)
Cone10ag1407 1037 Gene3D Ribonuclease Inhibitor 41 276 IPR032675 -
Cone10ag1407 1037 Gene3D Phosphorylase Kinase; domain 1 656 761 - -
Cone10ag1407 1037 ProSiteProfiles Protein kinase domain profile. 686 973 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag1407 1037 Pfam Leucine rich repeat 294 353 IPR001611 GO:0005515(InterPro)
Cone10ag1407 1037 Pfam Leucine rich repeat 104 161 IPR001611 GO:0005515(InterPro)
Cone10ag1407 1037 ProSitePatterns Protein kinases ATP-binding region signature. 692 714 IPR017441 GO:0005524(InterPro)
Cone10ag1407 1037 CDD STKc_IRAK 692 960 - -
Cone10ag1407 1037 Gene3D Transferase(Phosphotransferase) domain 1 762 966 - -
Cone10ag1407 1037 Pfam Malectin domain 425 609 IPR021720 -
Cone10ag1407 1037 SUPERFAMILY L domain-like 100 376 - -
Cone10ag1407 1037 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 655 761 - -
Cone10ag1407 1037 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 976 IPR051824 -
Cone10ag1407 1037 Pfam Protein tyrosine and serine/threonine kinase 689 958 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone10ag1407 1037 SMART serkin_6 686 958 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag1407 1037 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 283 376 - -
Cone10ag1407 1037 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 46 213 - -
Cone10ag1407 1037 ProSitePatterns Serine/Threonine protein kinases active-site signature. 809 821 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone10ag1407 1037 Gene3D Ribonuclease Inhibitor 277 400 IPR032675 -
Cone10ag1407 1037 Gene3D - 421 613 - -
Cone10ag1407 1037 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 214 280 - -
Cone10ag1407 1037 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 422 614 - -
Cone10ag1407 1037 FunFam Putative LRR receptor-like serine/threonine-protein kinase 762 970 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1407 Cone-Chr10:10929164 Cone6ag0206 Cone-Chr6:969913 1.12E-246 dispersed
Cone6ag0709 Cone-Chr6:3579306 Cone10ag1407 Cone-Chr10:10929164 1.93E-47 dispersed
Cone10ag1407 Cone-Chr10:10929164 Cone14ag0987 Cone-Chr14:8136457 1.47E-101 wgd
Cone10ag1407 Cone-Chr10:10929164 Cone3ag1470 Cone-Chr3:33310787 0 wgd
Cone10ag1407 Cone-Chr10:10929164 Cone5ag1634 Cone-Chr5:11537601 4.09E-237 wgd
Cone10ag1407 Cone-Chr10:10929164 Cone6ag0936 Cone-Chr6:4814838 1.28E-219 wgd
Cone10ag1407 Cone-Chr10:10929164 Cone9ag0938 Cone-Chr9:4639911 2.22E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81857 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1407 - - - 0.0