Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1416 ATGGCAAACACGGAGTTTTTGGATCAAGGAGCTGGGGGAACTTCCAGATCTTCTCCGGGAAAAATGGTGGCGGGAAGAGGTAAGATCGAGATCAAGCGGATCGAGAACACGACGAATCGACAAGTTACGTTCTGCAAGCGTAGAAACGGTTTGCTGAAGAAAGCATATGAATTATCAGTTCTATGTGATGCAGAAGTTGCTCTAGTTGTTTTTTCAACCCGTGGTCGTCTCTACGAGTATGCTAATAATAGTGTTAAAGATACTATTGAGAGATATAAGAAAGCACATGCTGACTCTTCCAATGCACAATCTGCTGTTGATACTAATCTTCAGTTTTACCAGCAAGAAGCCACCAAACTGAGAAGACAAATTAGAGAAATCCAAAGTTCAAACAGGCACATATTAGGAGAAGGTCTTGGCTCTTTGTCTGTTAAGGATCTGAAGAACCTTGAGGGAAGATTGGAGAAAGGAATTAGCAAAATTAGATCCAAGAAACACGAGATGTTGTCGGCAGAAATCGACTTCATGCGAAAGAGGGAGATTGAACTGCAAAACCATAACAATTATCTCCGAACAAAGATAGCTGAAAATGAAAGAGCACAACAACAGCATCAACATCAGCACCAGCATGAGGAAGGGAGTCATATGTTGCCTGGAGGCATGGGAGAAGGAGGAGGAGTTGTGTATGAGTGCATGCCAATAAGTCAAAGTCAAACACGAGAATATGCAGTAGTCAACCTTCTTGACTCTAATCTCAATCATTACAGCCCTCGCCAAGATCACCACACTGCTTTCCATTTTGTGTAA 807 42.26 MANTEFLDQGAGGTSRSSPGKMVAGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVKDTIERYKKAHADSSNAQSAVDTNLQFYQQEATKLRRQIREIQSSNRHILGEGLGSLSVKDLKNLEGRLEKGISKIRSKKHEMLSAEIDFMRKREIELQNHNNYLRTKIAENERAQQQHQHQHQHEEGSHMLPGGMGEGGGVVYECMPISQSQTREYAVVNLLDSNLNHYSPRQDHHTAFHFV 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10986119 10989922 + Conep10aG0145900.1 Cone10ag1416 447214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1416 268 MobiDBLite consensus disorder prediction 198 213 - -
Cone10ag1416 268 Coils Coil 110 130 - -
Cone10ag1416 268 SMART madsneu2 24 83 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone10ag1416 268 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 33 80 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone10ag1416 268 Coils Coil 183 203 - -
Cone10ag1416 268 ProSitePatterns MADS-box domain signature. 26 80 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone10ag1416 268 ProSiteProfiles MADS-box domain profile. 24 84 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone10ag1416 268 MobiDBLite consensus disorder prediction 1 16 - -
Cone10ag1416 268 SUPERFAMILY SRF-like 25 96 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone10ag1416 268 MobiDBLite consensus disorder prediction 198 222 - -
Cone10ag1416 268 PANTHER SERUM RESPONSE FACTOR HOMOLOG 25 209 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone10ag1416 268 PRINTS MADS domain signature 61 82 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone10ag1416 268 PRINTS MADS domain signature 46 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone10ag1416 268 PRINTS MADS domain signature 26 46 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone10ag1416 268 ProSiteProfiles K-box domain profile. 110 200 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone10ag1416 268 FunFam agamous-like MADS-box protein AGL11 36 119 - -
Cone10ag1416 268 Gene3D - 36 130 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone10ag1416 268 MobiDBLite consensus disorder prediction 1 23 - -
Cone10ag1416 268 CDD MADS_MEF2_like 25 101 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cone10ag1416 268 Pfam K-box region 108 194 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1416 Cone-Chr10:10986119 Cone17ag0728 Cone-Chr17:5336181 2.48E-71 dispersed
Cone10ag1416 Cone-Chr10:10986119 Cone5ag1602 Cone-Chr5:11253341 3.02E-15 wgd
Cone10ag1416 Cone-Chr10:10986119 Cone5ag1630 Cone-Chr5:11505545 3.45E-35 wgd
Cone10ag1416 Cone-Chr10:10986119 Cone6ag0933 Cone-Chr6:4798470 4.57E-82 wgd
Cone10ag1416 Cone-Chr10:10986119 Cone9ag0936 Cone-Chr9:4616470 1.01E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44267 PF00152 tRNA-synt_2 1.30E-101 CL0040 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1416 K09264 - gmx:100782733 309.301