Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone10ag1416 | ATGGCAAACACGGAGTTTTTGGATCAAGGAGCTGGGGGAACTTCCAGATCTTCTCCGGGAAAAATGGTGGCGGGAAGAGGTAAGATCGAGATCAAGCGGATCGAGAACACGACGAATCGACAAGTTACGTTCTGCAAGCGTAGAAACGGTTTGCTGAAGAAAGCATATGAATTATCAGTTCTATGTGATGCAGAAGTTGCTCTAGTTGTTTTTTCAACCCGTGGTCGTCTCTACGAGTATGCTAATAATAGTGTTAAAGATACTATTGAGAGATATAAGAAAGCACATGCTGACTCTTCCAATGCACAATCTGCTGTTGATACTAATCTTCAGTTTTACCAGCAAGAAGCCACCAAACTGAGAAGACAAATTAGAGAAATCCAAAGTTCAAACAGGCACATATTAGGAGAAGGTCTTGGCTCTTTGTCTGTTAAGGATCTGAAGAACCTTGAGGGAAGATTGGAGAAAGGAATTAGCAAAATTAGATCCAAGAAACACGAGATGTTGTCGGCAGAAATCGACTTCATGCGAAAGAGGGAGATTGAACTGCAAAACCATAACAATTATCTCCGAACAAAGATAGCTGAAAATGAAAGAGCACAACAACAGCATCAACATCAGCACCAGCATGAGGAAGGGAGTCATATGTTGCCTGGAGGCATGGGAGAAGGAGGAGGAGTTGTGTATGAGTGCATGCCAATAAGTCAAAGTCAAACACGAGAATATGCAGTAGTCAACCTTCTTGACTCTAATCTCAATCATTACAGCCCTCGCCAAGATCACCACACTGCTTTCCATTTTGTGTAA | 807 | 42.26 | MANTEFLDQGAGGTSRSSPGKMVAGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVKDTIERYKKAHADSSNAQSAVDTNLQFYQQEATKLRRQIREIQSSNRHILGEGLGSLSVKDLKNLEGRLEKGISKIRSKKHEMLSAEIDFMRKREIELQNHNNYLRTKIAENERAQQQHQHQHQHEEGSHMLPGGMGEGGGVVYECMPISQSQTREYAVVNLLDSNLNHYSPRQDHHTAFHFV | 268 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 10986119 | 10989922 | + | Conep10aG0145900.1 | Cone10ag1416 | 447214 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone10ag1416 | 268 | MobiDBLite | consensus disorder prediction | 198 | 213 | - | - | |
Cone10ag1416 | 268 | Coils | Coil | 110 | 130 | - | - | |
Cone10ag1416 | 268 | SMART | madsneu2 | 24 | 83 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone10ag1416 | 268 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 33 | 80 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone10ag1416 | 268 | Coils | Coil | 183 | 203 | - | - | |
Cone10ag1416 | 268 | ProSitePatterns | MADS-box domain signature. | 26 | 80 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone10ag1416 | 268 | ProSiteProfiles | MADS-box domain profile. | 24 | 84 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone10ag1416 | 268 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
Cone10ag1416 | 268 | SUPERFAMILY | SRF-like | 25 | 96 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone10ag1416 | 268 | MobiDBLite | consensus disorder prediction | 198 | 222 | - | - | |
Cone10ag1416 | 268 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 25 | 209 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cone10ag1416 | 268 | PRINTS | MADS domain signature | 61 | 82 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone10ag1416 | 268 | PRINTS | MADS domain signature | 46 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone10ag1416 | 268 | PRINTS | MADS domain signature | 26 | 46 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone10ag1416 | 268 | ProSiteProfiles | K-box domain profile. | 110 | 200 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cone10ag1416 | 268 | FunFam | agamous-like MADS-box protein AGL11 | 36 | 119 | - | - | |
Cone10ag1416 | 268 | Gene3D | - | 36 | 130 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone10ag1416 | 268 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cone10ag1416 | 268 | CDD | MADS_MEF2_like | 25 | 101 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Cone10ag1416 | 268 | Pfam | K-box region | 108 | 194 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone10ag1416 | Cone-Chr10:10986119 | Cone17ag0728 | Cone-Chr17:5336181 | 2.48E-71 | dispersed | |
Cone10ag1416 | Cone-Chr10:10986119 | Cone5ag1602 | Cone-Chr5:11253341 | 3.02E-15 | wgd | |
Cone10ag1416 | Cone-Chr10:10986119 | Cone5ag1630 | Cone-Chr5:11505545 | 3.45E-35 | wgd | |
Cone10ag1416 | Cone-Chr10:10986119 | Cone6ag0933 | Cone-Chr6:4798470 | 4.57E-82 | wgd | |
Cone10ag1416 | Cone-Chr10:10986119 | Cone9ag0936 | Cone-Chr9:4616470 | 1.01E-77 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44267 | PF00152 | tRNA-synt_2 | 1.30E-101 | CL0040 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone10ag1416 | K09264 | - | gmx:100782733 | 309.301 |