Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1424 ATGTCAAATAATGATCAAGAGAAGAACACTATGAATCCATATTGCAACCAGAAATACAATCCCTTCTATAATCATGATAGCAACCAACTGGATCCCCACAAATCAATCTTTCCACCACTCTTCAACGGCGGCGATCACGAGCAAGATTTACCATCAGCCCCTTCTACTTACAGTAATACGACACAAAACCCACATGTACTCGTGAACTTTTCCGATCATTTCTTGCATGACTCTGTGGATTATTATAAAACTCTGTCTAGAGCTTTCGACATGTCGTGTTCGTCATCTGAAGTTATATCTCCAATCGACGACATCACAGTTGCGACACCAGCCAATTCAGCTAACTCTGCGTCGTCTTCGTCCAATGAAGCAGGTGGTCAAGATTATCATGATCAGAAAGATGATTTCATGAAGAATAAGAAGAAGATTGTAAAGGGTGAAGAAGAAAATCAGTCTTGTGAAGATCATGAATCAGATGGAGTGAAGAACAAAGTCATGAACAAGGGGAAGAAGATGAAGGAGAAACAGGAGAAGGAGCCACGATTCGCCTTCTTGACTAAGAGCGAGATTGATCAACTTGAAGATGGATATAGATGGCGAAAATATGGCCAGAAAGCTGTCAAAAATAGTCCTTATCCCAGAAGTTACTACAGATGCACGAGTCAGAAGTGCAGTGTGAAGAAGCGAGTTGAAAGATCATTTCAAGACCCGTCTATTGTGATCACAACATATGAAGGAAAGCATAACCACTATTGCCCGGCCACACTTCGGGGCATTGGTATTAATGCTTCGGCCGGAATGTTCTCATCATCGCCGGCCCTTTTGAGATCGTCTGATTCTACCGGCCCAACTGCCCTGATCAGACCTGGCTTTCCCCAAGAACTATTGGCTCAGTTCCTTCCCATTACCAATACTAACCAAGTTAGGGACCAAAGCTCAGGTTTGTATCAAAACCTAAACCTTCTTCAGCTTCAACAACAATTTGAGATTCCTGATCATAATTGTGGTTTATTGCAAGATTTAATCCCATAG 1032 42.15 MSNNDQEKNTMNPYCNQKYNPFYNHDSNQLDPHKSIFPPLFNGGDHEQDLPSAPSTYSNTTQNPHVLVNFSDHFLHDSVDYYKTLSRAFDMSCSSSEVISPIDDITVATPANSANSASSSSNEAGGQDYHDQKDDFMKNKKKIVKGEEENQSCEDHESDGVKNKVMNKGKKMKEKQEKEPRFAFLTKSEIDQLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCSVKKRVERSFQDPSIVITTYEGKHNHYCPATLRGIGINASAGMFSSSPALLRSSDSTGPTALIRPGFPQELLAQFLPITNTNQVRDQSSGLYQNLNLLQLQQQFEIPDHNCGLLQDLIP 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11017299 11018866 + Conep10aG0146700.1 Cone10ag1424 447222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1424 343 ProSiteProfiles WRKY domain profile. 188 253 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag1424 343 Pfam WRKY DNA -binding domain 194 250 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag1424 343 MobiDBLite consensus disorder prediction 110 126 - -
Cone10ag1424 343 SUPERFAMILY WRKY DNA-binding domain 186 253 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag1424 343 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 80 260 IPR044810 GO:0003700(InterPro)
Cone10ag1424 343 Gene3D WRKY domain 178 254 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag1424 343 SMART WRKY_cls 193 252 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag1424 343 FunFam WRKY transcription factor 57 179 253 - -
Cone10ag1424 343 MobiDBLite consensus disorder prediction 110 133 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1424 Cone-Chr10:11017299 Cone1ag0248 Cone-Chr1:1653400 1.82E-44 dispersed
Cone10ag1424 Cone-Chr10:11017299 Cone3ag1488 Cone-Chr3:33533095 6.45E-194 wgd
Cone10ag1424 Cone-Chr10:11017299 Cone5ag1608 Cone-Chr5:11290360 4.37E-46 wgd
Cone10ag1424 Cone-Chr10:11017299 Cone6ag0908 Cone-Chr6:4663736 2.96E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44268 PF08491 SE 1.40E-81 CL0063 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1424 - - - 0.0