Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1432 ATGGACCAGTCGGACCAGCAACAGCAGCCCATGGGGGGTACCGGCCCTGGCCAAATGGCTGCATACTCTTCCGCTCCATACCAAACCAGTCCCATGGTGCCTCCGGGAACCACTACATCAGCTCCGAACACTTTCTCAAACTCACCACATCAGCTTGCGTACCAACAAGCCCAACACTTCCACCACCAACAGCAGCAGCAACAACAACAACAGCTCCAAATGTTCTGGGCAAACCAAATGCAAGAAATCGAGCAAACAACCGACTTCAAGAACCACAGCTTACCCCTGGCCCGCATCAAGAAGATCATGAAAGCTGACGAGGATGTCCGTATGATCTCAGCAGAAGCTCCCGTCATTTTCGCAAAAGCATGTGAAATGTTCATCCTAGAGTTGACTCTACGCTCTTGGATTCATACCGAAGAGAACAAGAGGCGAACTCTACAGAAGAATGATATTGCTGCTGCAATTTCTAGGACCGATGTGTTCGACTTTTTGGTCGATATTATCCCTAGAGACGAGTTGAAAGAGGAGGGGCTTGGAGTTACTAAAGCCACTATTCCCATGGCTGGCTCTCCGAACAATCTTCCATATTACTATGTCCCGCCACCTCAGCATTCTGTGGGGCCCACCGGTATGATTATGGGGAAGCCTGTGGTGGATCAAGGGACGATGATGTATGCTGCTGCTGGTTCTCAGCAGCAGCCAGCACGGCCGCCTATGGCTTTCATGCCATGGCCTCAGCAGCAGCAGCAGCAGCAGCAACAACAACAATCCCAACAGCGGTGA 786 51.4 MDQSDQQQQPMGGTGPGQMAAYSSAPYQTSPMVPPGTTTSAPNTFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGVTKATIPMAGSPNNLPYYYVPPPQHSVGPTGMIMGKPVVDQGTMMYAAAGSQQQPARPPMAFMPWPQQQQQQQQQQQSQQR 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11150110 11151810 - Conep10aG0147600.1 Cone10ag1432 447230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1432 261 MobiDBLite consensus disorder prediction 230 261 - -
Cone10ag1432 261 SUPERFAMILY Histone-fold 49 165 IPR009072 GO:0046982(InterPro)
Cone10ag1432 261 Pfam Core histone H2A/H2B/H3/H4 47 156 IPR007125 GO:0003677(InterPro)
Cone10ag1432 261 Gene3D Histone, subunit A 54 171 IPR009072 GO:0046982(InterPro)
Cone10ag1432 261 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 66 254 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cone10ag1432 261 FunFam Nuclear transcription factor Y subunit gamma 59 171 - -
Cone10ag1432 261 MobiDBLite consensus disorder prediction 1 48 - -
Cone10ag1432 261 MobiDBLite consensus disorder prediction 21 48 - -
Cone10ag1432 261 MobiDBLite consensus disorder prediction 244 261 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0745 Cone-Chr10:3757038 Cone10ag1432 Cone-Chr10:11150110 1.51E-75 dispersed
Cone10ag1432 Cone-Chr10:11150110 Cone1ag1761 Cone-Chr1:58245827 2.52E-70 dispersed
Cone6ag0767 Cone-Chr6:3911492 Cone10ag1432 Cone-Chr10:11150110 3.42E-29 transposed
Cone10ag1432 Cone-Chr10:11150110 Cone3ag1500 Cone-Chr3:33585649 4.44E-155 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44269 PF00564 PB1 1.20E-17 CL0072 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1432 K08066 - rcu:8260315 326.25