Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone10ag1432 | ATGGACCAGTCGGACCAGCAACAGCAGCCCATGGGGGGTACCGGCCCTGGCCAAATGGCTGCATACTCTTCCGCTCCATACCAAACCAGTCCCATGGTGCCTCCGGGAACCACTACATCAGCTCCGAACACTTTCTCAAACTCACCACATCAGCTTGCGTACCAACAAGCCCAACACTTCCACCACCAACAGCAGCAGCAACAACAACAACAGCTCCAAATGTTCTGGGCAAACCAAATGCAAGAAATCGAGCAAACAACCGACTTCAAGAACCACAGCTTACCCCTGGCCCGCATCAAGAAGATCATGAAAGCTGACGAGGATGTCCGTATGATCTCAGCAGAAGCTCCCGTCATTTTCGCAAAAGCATGTGAAATGTTCATCCTAGAGTTGACTCTACGCTCTTGGATTCATACCGAAGAGAACAAGAGGCGAACTCTACAGAAGAATGATATTGCTGCTGCAATTTCTAGGACCGATGTGTTCGACTTTTTGGTCGATATTATCCCTAGAGACGAGTTGAAAGAGGAGGGGCTTGGAGTTACTAAAGCCACTATTCCCATGGCTGGCTCTCCGAACAATCTTCCATATTACTATGTCCCGCCACCTCAGCATTCTGTGGGGCCCACCGGTATGATTATGGGGAAGCCTGTGGTGGATCAAGGGACGATGATGTATGCTGCTGCTGGTTCTCAGCAGCAGCCAGCACGGCCGCCTATGGCTTTCATGCCATGGCCTCAGCAGCAGCAGCAGCAGCAGCAACAACAACAATCCCAACAGCGGTGA | 786 | 51.4 | MDQSDQQQQPMGGTGPGQMAAYSSAPYQTSPMVPPGTTTSAPNTFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGVTKATIPMAGSPNNLPYYYVPPPQHSVGPTGMIMGKPVVDQGTMMYAAAGSQQQPARPPMAFMPWPQQQQQQQQQQQSQQR | 261 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 11150110 | 11151810 | - | Conep10aG0147600.1 | Cone10ag1432 | 447230 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone10ag1432 | 261 | MobiDBLite | consensus disorder prediction | 230 | 261 | - | - | |
Cone10ag1432 | 261 | SUPERFAMILY | Histone-fold | 49 | 165 | IPR009072 | GO:0046982(InterPro) | |
Cone10ag1432 | 261 | Pfam | Core histone H2A/H2B/H3/H4 | 47 | 156 | IPR007125 | GO:0003677(InterPro) | |
Cone10ag1432 | 261 | Gene3D | Histone, subunit A | 54 | 171 | IPR009072 | GO:0046982(InterPro) | |
Cone10ag1432 | 261 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 66 | 254 | IPR050568 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER) | |
Cone10ag1432 | 261 | FunFam | Nuclear transcription factor Y subunit gamma | 59 | 171 | - | - | |
Cone10ag1432 | 261 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Cone10ag1432 | 261 | MobiDBLite | consensus disorder prediction | 21 | 48 | - | - | |
Cone10ag1432 | 261 | MobiDBLite | consensus disorder prediction | 244 | 261 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone10ag0745 | Cone-Chr10:3757038 | Cone10ag1432 | Cone-Chr10:11150110 | 1.51E-75 | dispersed | |
Cone10ag1432 | Cone-Chr10:11150110 | Cone1ag1761 | Cone-Chr1:58245827 | 2.52E-70 | dispersed | |
Cone6ag0767 | Cone-Chr6:3911492 | Cone10ag1432 | Cone-Chr10:11150110 | 3.42E-29 | transposed | |
Cone10ag1432 | Cone-Chr10:11150110 | Cone3ag1500 | Cone-Chr3:33585649 | 4.44E-155 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44269 | PF00564 | PB1 | 1.20E-17 | CL0072 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone10ag1432 | K08066 | - | rcu:8260315 | 326.25 |