Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1447 ATGGCTTTGGCTGTTCGATGGAGCAGGCTCCTTCTCCACCGCTTCTCTTCTCCACCGCTTCTCTACTCCCGCCACGCTCAGATGAGCACGGAGGCACACGCCACCGTTGACCGTCTGAAGAGTAGCGGAATATGGAGGACTAGTGGCCTTATTGCCGGCCAATGGACTGATGCTTACGATGGCAATACCTTACAGGTTTCTAATCCAGCAACTGGTGAAGTTATAGCTGACGTCTCCTGCATGGGTGCATCCGAGTCCAATGATGCTATTTCTTCTGCCTTTCATGCTTTTCAATCTTGGAGCAAGCTCACTGCTGCAGATAGGAGCAATCGTCTTCGCAAATGGTATGATCTCTTAATTGCCCACAAAGAAGAGCTGGCCCAACTTATAACCTTAGAGCAAGGAAAACCCCTTAAAGAAGCCTTGGGTGAGGTAAGCTACGGGGCTAGCTTCATCGAGTTCTTTGCAGAGGAAGCAAAACGAGTATATGGTGATATCATCCCACCAACTCTACCCGATCGACGACTGTTTGTCTTAAAGCAGCCTGTTGGAGTTGTTGGGGCAATTGCACCTTGGAACTTTCCCTTGGCTATGATTACTCGGAAGGTTGGTCCTGCTCTAGCCAGCGGCTGTACAGTTGTCATAAAACCCTCTGAACTCACACCACTCACAGCGTTAGCAGCAGCTGAACTCTCCCTTCAAGCTGGAATTCCACCGGGTGTTGTGAATGTGGTTACGGGAAATGCTTCTGATATTGGCAACGCTTTAATTGCGAGTCCAAAGGTTAGAAAGATCACATTCACAGGCTCAACAGCAGTTGGAAAGAAGTTAATGGCAGGTGCTGCTGCGACTGTTAAAAAGGTTTCTCTAGAACTTGGGGGTAATGCACCTTGCATAATCTTTGATGATGCAGATGTGGATGTAGCAATAAAAGGAACTCTTGCAGCAAAGTTCCGGAATAGTGGACAAACTTGTGTTTGTGCAAATAGGATTATTGTTCAAGAAGGCATATATGACATATTTGCAAATGCCTTCTCAAAAGCTGTCCAGAATTTGCAAGTTGGGGATGGCTTCAGTGAAGGTGTGACTCAGGGTCCTCTAATTAATGAAGCTGCAGTACAGAAGGTTGAATCATTTCTTCAAGATGCCAAGTCTAAGGGAGCAAACGTTATTCTTGGGGGTAAAAGGCATCAGCTTGGGATGACTTTCTATGAGCCTACTGTTGTTACCGATGTCAAGAACGACATGCTTCTGTCAAGGGAGGAAGTATTTGGTCCTGTGGCGCCCCTATTGCGGTTCAGTACTGAGGAGGAAGCGATCAACCTAGCTAACGACACCAATGCAGGGTTAGCTGCTTACTTATTTACAAACAGTGTTCAACGTTCATGGCGAGTGGCTGAAGCTCTTGAATATGGACTTGTTGGTGTCAATGAAGGCGTAATTTCAACAGAGGTGGCTCCATTTGGAGGTGTCAAACAATCAGGGCTTGGTCGGGAAGGTTCTAAATACGGGATGGATGAATATCTGGAGATAAAATACATTTGCTTAGGGAATATGAAGAGCAATTGA 1569 46.4 MALAVRWSRLLLHRFSSPPLLYSRHAQMSTEAHATVDRLKSSGIWRTSGLIAGQWTDAYDGNTLQVSNPATGEVIADVSCMGASESNDAISSAFHAFQSWSKLTAADRSNRLRKWYDLLIAHKEELAQLITLEQGKPLKEALGEVSYGASFIEFFAEEAKRVYGDIIPPTLPDRRLFVLKQPVGVVGAIAPWNFPLAMITRKVGPALASGCTVVIKPSELTPLTALAAAELSLQAGIPPGVVNVVTGNASDIGNALIASPKVRKITFTGSTAVGKKLMAGAAATVKKVSLELGGNAPCIIFDDADVDVAIKGTLAAKFRNSGQTCVCANRIIVQEGIYDIFANAFSKAVQNLQVGDGFSEGVTQGPLINEAAVQKVESFLQDAKSKGANVILGGKRHQLGMTFYEPTVVTDVKNDMLLSREEVFGPVAPLLRFSTEEEAINLANDTNAGLAAYLFTNSVQRSWRVAEALEYGLVGVNEGVISTEVAPFGGVKQSGLGREGSKYGMDEYLEIKYICLGNMKSN 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11209411 11220207 + Conep10aG0149100.1 Cone10ag1447 447245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1447 522 NCBIfam succinate-semialdehyde dehydrogenase 66 512 IPR010102 GO:0009013(InterPro)|GO:0009450(InterPro)
Cone10ag1447 522 Pfam Aldehyde dehydrogenase family 55 514 IPR015590 GO:0016491(InterPro)
Cone10ag1447 522 SUPERFAMILY ALDH-like 43 518 IPR016161 GO:0016491(InterPro)
Cone10ag1447 522 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 294 483 IPR016163 GO:0016620(InterPro)
Cone10ag1447 522 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 318 329 IPR016160 GO:0016491(InterPro)
Cone10ag1447 522 CDD ALDH_F5_SSADH_GabD 66 516 - -
Cone10ag1447 522 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 290 297 IPR029510 GO:0016491(InterPro)
Cone10ag1447 522 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 39 519 IPR050740 GO:0004777(PANTHER)|GO:0006807(PANTHER)|GO:0009450(PANTHER)
Cone10ag1447 522 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 61 508 IPR016162 GO:0016491(InterPro)
Cone10ag1447 522 FunFam Succinate-semialdehyde dehydrogenase I 294 483 - -
Cone10ag1447 522 FunFam Succinate-semialdehyde dehydrogenase I 61 302 - -
Cone10ag1447 522 FunFam Aldehyde dehydrogenase, putative 486 512 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1447 Cone-Chr10:11209411 Cone7ag0693 Cone-Chr7:3928633 3.44E-106 dispersed
Cone10ag1447 Cone-Chr10:11209411 Cone8ag0655 Cone-Chr8:6514282 1.58E-107 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1447 K17761 - mdm:114827709 812.757