Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0017 ATGCTTCCCACAGCCGACGGCGTAGCTTGGATGGACCCACCTGACCACGAACAAGACGACTCCGCCTCTTGGACCAAACCTCACGACGGCTTTATCCACGACTCCAACACCATCAAGAACCACCAGCTCGACATCTCCATGTCCATGGCCGCTTCTCTCTCTTCTTTCAAATCCATGCTCGACGCTGACTGGTTCCTCAACCCTTCTCGTACCCATGACCTCCATTCCCTTCACTCTCACCACGATCAAGATATGAATGCCGCCGCCTTCTGCTCTAACCCCGCTCCTACCGACGACTTGCTCCTCCACCCAATCGACTCCTCCTCTTCATGCTCTCCTTCCCAGACTTTCACTCTCGACCCTGTAGCTTCTTCCCACTCTCTCCCCTTCTTCCCCCATCACAAATCCTGCTTCCCTTCCCTCCTCAACGTCCCTAACAATTTCGACAATGCCTTCGATTTGACCTGCGAAACAGCTGGCTTTCTCGGATCCTTTCAGGGGAACAATCAAGCTGCTTCCAATTCTCATCTCCTAATAGCCGGTTTCGGGGGAATGACTCCTCAGGAGCTCAGCTCCGCCTCCGAGTTCCAGGCAACCACCCGTCTGCTTCCTTTATCCGAAAACACGGGCCCTGCCCCGCTAGGCTCTGGAAGCGGCTCTGGGTTTAATCCGGTGGGATTCGAGGCCTTTGATGGGCCTGAAAATGGTATATTTCAAAACAAGGCAAATGTTTTAAGACCTCTAGAAGTTTTCCCTCCAATGGGAGCGCAGCCTACTCTGTTTCAGAAGAGAGCAGCGCAAAGACAGAGCTCAGGTGGTGGTGGAGGTGATAAATTAGACAACTTGGAGGTTCCGGGTTTGAGATTTGGAGGAGGGTCATCTTTAGGGATGATGATGGAGAGTTTGGAAAAAAAGAGGAGGAGGAGTTGTGAGGAGGGTGAAATTGAGGATGCGAGCATTGATGTTTCTGGTTTGAATTATGATTCTGATGAGCTTAACGAGTTTAGTAAGATGGAAGAGAATGCTGCTAAAGTTGGTAATGGTGGAAGTAATTCTAATGCTAATAGTAGTGTTACTGGTGGTGAAGGAGGAGGAGATCACAAGGGGAAGAAGAAGGGGCTTCCGGCCAAGAATCTTATGGCCGAAAGGCGCCGCAGAAAGAAGTTGAATGATCGTCTCTACATGCTCCGCTCTGTCGTTCCTAAGATCAGCAAGATGGATAGGGCATCGATACTTGGAGATGCAGTAGACTACTTGAAGGAGCTTCTGCAAAGGATCAATGATCTTCATAATGAGTTGGAGACAACCCCAGGAAGCGGCTCTCTGTCCCTGCCTTCTTCAAGCTTTCACCCTTTGACTCCCACTCCTCCAACTCTTCCATGCACCGTCAAGGAAGAGCTTTGCCCCAACTCGCTCTCCAGCCCTCAAAACCAACCTGCCAGGGTGGAAGTAAGAGTGAGGGAAGGGAGGGCTGTGAATATCCACATGTTTTGTGGACGCAGACCAGGGATGTTGCTGTCCACGATCAGGGCATTAGACAACCTTGGTTTGGATATCCAGCAGGCTGTCATTAGCTGTTTCAATGGCTTTGCCTTGGACGTCTTTCGAGCTGAGCAATGCAGGGAAGGTCAGGATGTGTTGCCGGAGCAGATAAAGGCTGTTCTATTGGACTCTGCTGGCTTCCATGCTACGGTCTAG 1698 50.88 MLPTADGVAWMDPPDHEQDDSASWTKPHDGFIHDSNTIKNHQLDISMSMAASLSSFKSMLDADWFLNPSRTHDLHSLHSHHDQDMNAAAFCSNPAPTDDLLLHPIDSSSSCSPSQTFTLDPVASSHSLPFFPHHKSCFPSLLNVPNNFDNAFDLTCETAGFLGSFQGNNQAASNSHLLIAGFGGMTPQELSSASEFQATTRLLPLSENTGPAPLGSGSGSGFNPVGFEAFDGPENGIFQNKANVLRPLEVFPPMGAQPTLFQKRAAQRQSSGGGGGDKLDNLEVPGLRFGGGSSLGMMMESLEKKRRRSCEEGEIEDASIDVSGLNYDSDELNEFSKMEENAAKVGNGGSNSNANSSVTGGEGGGDHKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAVDYLKELLQRINDLHNELETTPGSGSLSLPSSSFHPLTPTPPTLPCTVKEELCPNSLSSPQNQPARVEVRVREGRAVNIHMFCGRRPGMLLSTIRALDNLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPEQIKAVLLDSAGFHATV 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 112158 115308 - Conep11aG0001800.1 Cone11ag0017 447269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0017 565 Pfam Helix-loop-helix DNA-binding domain 380 422 IPR011598 GO:0046983(InterPro)
Cone11ag0017 565 MobiDBLite consensus disorder prediction 343 375 - -
Cone11ag0017 565 Pfam Plant bHLH transcription factor, ACT-like domain 482 555 IPR054502 -
Cone11ag0017 565 MobiDBLite consensus disorder prediction 262 284 - -
Cone11ag0017 565 FunFam BHLH transcription factor 369 437 - -
Cone11ag0017 565 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 373 422 IPR011598 GO:0046983(InterPro)
Cone11ag0017 565 CDD ACT_UUR-ACR-like 494 554 - -
Cone11ag0017 565 CDD bHLH_AtAMS_like 376 436 - -
Cone11ag0017 565 MobiDBLite consensus disorder prediction 345 360 - -
Cone11ag0017 565 Gene3D - 367 436 IPR036638 GO:0046983(InterPro)
Cone11ag0017 565 SMART finulus 379 428 IPR011598 GO:0046983(InterPro)
Cone11ag0017 565 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 324 562 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cone11ag0017 565 MobiDBLite consensus disorder prediction 1 25 - -
Cone11ag0017 565 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 376 439 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0017 Cone-Chr11:112158 Cone17ag1159 Cone-Chr17:8553316 2.32E-37 dispersed
Cone11ag0017 Cone-Chr11:112158 Cone16ag1029 Cone-Chr16:9923448 9.90E-178 wgd
Cone11ag0017 Cone-Chr11:112158 Cone18ag1463 Cone-Chr18:9795181 0 wgd
Cone11ag0017 Cone-Chr11:112158 Cone2ag0011 Cone-Chr2:91010 6.39E-175 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44273 PF00777 Glyco_transf_29 1.70E-20 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0017 - - - 0.0