Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0023 ATGGATCAGGCAATGGATCCAAGCGGGTTGAGACTTCTGTTCCAAAAGGAGCTTAAGAACAGCGATGTTAGCTCCCTTAGGAGAATGATTCTCCCAAAGAAAGCAGCAGAGGCTCACCTCCCTCGTCTGGACTGTAAGGAGGGCATTCTTATGAACATGGACGACTTGGATGGCCTCCACGTTTGGAACTTCAAGTACAGGTTTTGGCCTAATAACAACAGCAGAATGTATGTGCTGGAAAACACAGGGGACTTTGTTAACACTCACGGCTTGCAGCTCGGAGATTCGATCATGGTGTATCAAGATAATCAAACTCAACACTATGTAATTCAGGCCAAAAAGGCTTCAGATCATCATCAAGAAATATATAGTGGGATAGTAACGAATAGTAGTGGCAACGACCAGCTGCAATTTGTTCACAGTTACGATTATGAGGTTAACCAATCAGGTATATTTTCGGACCATAACATGCCGGCAACAATATTTATGGATGATGCAGCAGGCATGTCATTTATCTACGACACCATCACCACCTTTTCCAGCGACTCTCCGCTCGATTTCTTGGGTGGATCAATGAGCAGCAGCTATACCAGAAACTCGGCAACTTCTACTCATCTTGAAGGTTTTGGTTCGGTCGACAATTTGTCTCTCGACGACTTTTATTAA 666 44.14 MDQAMDPSGLRLLFQKELKNSDVSSLRRMILPKKAAEAHLPRLDCKEGILMNMDDLDGLHVWNFKYRFWPNNNSRMYVLENTGDFVNTHGLQLGDSIMVYQDNQTQHYVIQAKKASDHHQEIYSGIVTNSSGNDQLQFVHSYDYEVNQSGIFSDHNMPATIFMDDAAGMSFIYDTITTFSSDSPLDFLGGSMSSSYTRNSATSTHLEGFGSVDNLSLDDFY 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 135379 136422 - Conep11aG0002400.1 Cone11ag0023 447275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0023 221 SMART B3_2 14 116 IPR003340 GO:0003677(InterPro)
Cone11ag0023 221 SUPERFAMILY DNA-binding pseudobarrel domain 12 110 IPR015300 -
Cone11ag0023 221 Pfam B3 DNA binding domain 14 112 IPR003340 GO:0003677(InterPro)
Cone11ag0023 221 CDD B3_DNA 13 114 IPR003340 GO:0003677(InterPro)
Cone11ag0023 221 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 12 124 IPR044800 GO:0003700(InterPro)
Cone11ag0023 221 FunFam B3 domain-containing transcription factor FUS3 10 124 - -
Cone11ag0023 221 ProSiteProfiles B3 DNA-binding domain profile. 14 116 IPR003340 GO:0003677(InterPro)
Cone11ag0023 221 Gene3D - 10 125 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0023 Cone-Chr11:135379 Cone15ag0878 Cone-Chr15:6736370 2.82E-32 dispersed
Cone11ag0023 Cone-Chr11:135379 Cone16ag1028 Cone-Chr16:9914226 5.89E-73 wgd
Cone11ag0023 Cone-Chr11:135379 Cone18ag1457 Cone-Chr18:9767436 3.62E-133 wgd
Cone11ag0023 Cone-Chr11:135379 Cone2ag0012 Cone-Chr2:100848 7.32E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44274 PF00300 His_Phos_1 1.00E-19 CL0071 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0023 K09287 - cit:102617915 266.929