Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0038 ATGGGTGAAGATGAAACAAACAACAAGAGACCAGCAGAAATCAAAGATTTTCAGATTGTAATTGCGGAAAAAGAAGAGGGCAGCAAAAACAAGCAGCTGGCAGCAAAAACAAGCTCGAGCAAGGACAGACACACAAAAGTTGAAGGCAGGGGAAGAAGAATAAGAATACCAGCTTTATGTGCAGCCAGAGTTTTCCAACTAACCAGAGAGCTTGGCCACAAATCCGACGGTGAAACCATACAGTGGCTTCTACAGCAATCTGAGCCGTCCATAATTGCCGCCACAGGCAGCGGCACGATCCCCGCCTCCGCCTTAGCTGTTGCTGGAACAGGGGTCTCTGTCTCGCAGCAGGGGAATTCTGTTTCCACTGGATTGATAATGCACAATAAGATTGATGAATTTGGTGGGCCAGGTAGTATTAGTAGTAGGGTCAGCTGGGATGCTATGGTTAATAATATTAATGGAGGTAATAATCTATGGCCCTCTGTTCTAACTGGTTTTGGTGCTTCGTCGTCATCAACCATTAATCTGGGTGTTGTAGATGGTTCAAACTATATGCACAGAATTGGTGTTTCAGGGTTTGATTTTCCACAACCTGGTAATTTGGGTCCTAAGAATTTTACTTCAATTATGGGTGGGAACAATAATAATCATAATAGTAGTAGTAATCAGCAGCAGTTTCCTGGATTGGAGCTTGGTTTATCACAAGATGCTCATAGTGGGCCAATTGGGGTTCTGAACCCACAAGCTCTAGCCCAGATTTATCAACAATTGGGTCAGCCTAGATATCACCACCACCACCACCACCACCACCAAGACCAACCGACACATCATCACCACCCCGACCATCAGCAACCGCCTGCTAAGGATGATTCTGGAGGATCAGGGCAGTAG 894 45.64 MGEDETNNKRPAEIKDFQIVIAEKEEGSKNKQLAAKTSSSKDRHTKVEGRGRRIRIPALCAARVFQLTRELGHKSDGETIQWLLQQSEPSIIAATGSGTIPASALAVAGTGVSVSQQGNSVSTGLIMHNKIDEFGGPGSISSRVSWDAMVNNINGGNNLWPSVLTGFGASSSSTINLGVVDGSNYMHRIGVSGFDFPQPGNLGPKNFTSIMGGNNNNHNSSSNQQQFPGLELGLSQDAHSGPIGVLNPQALAQIYQQLGQPRYHHHHHHHHQDQPTHHHHPDHQQPPAKDDSGGSGQ 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 200499 201392 - Conep11aG0003900.1 Cone11ag0038 447290

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0038 297 Pfam TCP family transcription factor 39 145 IPR017887 -
Cone11ag0038 297 MobiDBLite consensus disorder prediction 205 227 - -
Cone11ag0038 297 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 31 281 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cone11ag0038 297 ProSiteProfiles TCP domain profile. 40 94 IPR017887 -
Cone11ag0038 297 MobiDBLite consensus disorder prediction 261 276 - -
Cone11ag0038 297 MobiDBLite consensus disorder prediction 25 49 - -
Cone11ag0038 297 MobiDBLite consensus disorder prediction 261 297 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0038 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0038 Cone-Chr11:200499 Cone14ag0318 Cone-Chr14:1501325 2.48E-32 dispersed
Cone11ag0038 Cone-Chr11:200499 Cone16ag1006 Cone-Chr16:9820009 2.03E-83 wgd
Cone11ag0038 Cone-Chr11:200499 Cone18ag1441 Cone-Chr18:9703268 4.24E-148 wgd
Cone11ag0038 Cone-Chr11:200499 Cone2ag0034 Cone-Chr2:186883 1.92E-84 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone1ag1521 . 29 250 TCP Transcription Factor Family AT5G23280 62.7 3.5e-65 245.7
Cone5ag0514 . 31 254 TCP Transcription Factor Family AT5G23280 61.9 5.0e-64 241.9
Cone14ag0318 . 1 348 TCP Transcription Factor Family AT2G45680 50.8 6.6e-70 261.9
Cone15ag0348 . 71 342 TCP Transcription Factor Family AT2G45680 54.6 1.6e-63 240.7
Cone19ag0075 . 78 175 TCP Transcription Factor Family AT3G47620 88.9 6.8e-41 166.0
Cone19ag0952 . 67 154 TCP Transcription Factor Family AT3G47620 92.0 4.9e-39 159.8
Cone19ag0075 . 78 172 TCP Transcription Factor Family AT1G69690 87.4 3.6e-38 156.4
Cone2ag0034 . 75 304 TCP Transcription Factor Family AT3G27010 60.4 5.9e-62 235.3
Cone16ag1006 . 32 266 TCP Transcription Factor Family AT3G27010 60.5 7.7e-62 235.0
Cone18ag1441 . 1 291 TCP Transcription Factor Family AT3G27010 53.2 1.2e-54 211.1
Cone11ag0038 . 5 260 TCP Transcription Factor Family AT3G27010 52.3 1.1e-52 204.5
Cone5ag0514 . 1 252 TCP Transcription Factor Family AT5G08330 55.4 4.8e-64 241.9
Cone1ag1521 . 1 248 TCP Transcription Factor Family AT5G08330 55.3 3.1e-63 239.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0029951 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44275 PF03009 GDPD 6.00E-53 CL0384 Cone TF