Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0038 ATGGGTGAAGATGAAACAAACAACAAGAGACCAGCAGAAATCAAAGATTTTCAGATTGTAATTGCGGAAAAAGAAGAGGGCAGCAAAAACAAGCAGCTGGCAGCAAAAACAAGCTCGAGCAAGGACAGACACACAAAAGTTGAAGGCAGGGGAAGAAGAATAAGAATACCAGCTTTATGTGCAGCCAGAGTTTTCCAACTAACCAGAGAGCTTGGCCACAAATCCGACGGTGAAACCATACAGTGGCTTCTACAGCAATCTGAGCCGTCCATAATTGCCGCCACAGGCAGCGGCACGATCCCCGCCTCCGCCTTAGCTGTTGCTGGAACAGGGGTCTCTGTCTCGCAGCAGGGGAATTCTGTTTCCACTGGATTGATAATGCACAATAAGATTGATGAATTTGGTGGGCCAGGTAGTATTAGTAGTAGGGTCAGCTGGGATGCTATGGTTAATAATATTAATGGAGGTAATAATCTATGGCCCTCTGTTCTAACTGGTTTTGGTGCTTCGTCGTCATCAACCATTAATCTGGGTGTTGTAGATGGTTCAAACTATATGCACAGAATTGGTGTTTCAGGGTTTGATTTTCCACAACCTGGTAATTTGGGTCCTAAGAATTTTACTTCAATTATGGGTGGGAACAATAATAATCATAATAGTAGTAGTAATCAGCAGCAGTTTCCTGGATTGGAGCTTGGTTTATCACAAGATGCTCATAGTGGGCCAATTGGGGTTCTGAACCCACAAGCTCTAGCCCAGATTTATCAACAATTGGGTCAGCCTAGATATCACCACCACCACCACCACCACCACCAAGACCAACCGACACATCATCACCACCCCGACCATCAGCAACCGCCTGCTAAGGATGATTCTGGAGGATCAGGGCAGTAG 894 45.64 MGEDETNNKRPAEIKDFQIVIAEKEEGSKNKQLAAKTSSSKDRHTKVEGRGRRIRIPALCAARVFQLTRELGHKSDGETIQWLLQQSEPSIIAATGSGTIPASALAVAGTGVSVSQQGNSVSTGLIMHNKIDEFGGPGSISSRVSWDAMVNNINGGNNLWPSVLTGFGASSSSTINLGVVDGSNYMHRIGVSGFDFPQPGNLGPKNFTSIMGGNNNNHNSSSNQQQFPGLELGLSQDAHSGPIGVLNPQALAQIYQQLGQPRYHHHHHHHHQDQPTHHHHPDHQQPPAKDDSGGSGQ 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 200499 201392 - Conep11aG0003900.1 Cone11ag0038 447290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0038 297 Pfam TCP family transcription factor 39 145 IPR017887 -
Cone11ag0038 297 MobiDBLite consensus disorder prediction 205 227 - -
Cone11ag0038 297 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 31 281 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cone11ag0038 297 ProSiteProfiles TCP domain profile. 40 94 IPR017887 -
Cone11ag0038 297 MobiDBLite consensus disorder prediction 261 276 - -
Cone11ag0038 297 MobiDBLite consensus disorder prediction 25 49 - -
Cone11ag0038 297 MobiDBLite consensus disorder prediction 261 297 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0038 Cone-Chr11:200499 Cone14ag0318 Cone-Chr14:1501325 2.48E-32 dispersed
Cone11ag0038 Cone-Chr11:200499 Cone16ag1006 Cone-Chr16:9820009 2.03E-83 wgd
Cone11ag0038 Cone-Chr11:200499 Cone18ag1441 Cone-Chr18:9703268 4.24E-148 wgd
Cone11ag0038 Cone-Chr11:200499 Cone2ag0034 Cone-Chr2:186883 1.92E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44275 PF03009 GDPD 6.00E-53 CL0384 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0038 - - - 0.0