Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0047 ATGAGGTTCAAAGTTTGGAAGATTTTTTGTCCAATTGTTGGTTGTGGTGCATGTTTAGCTTCTTTAGAGGACTTTGAAGATCATTACATCGCACGGCACACTGCTTCATGTTCTGTTTGTTCGAGAGTCTACCCGACTGCACGACTTCTTAGTATACATATATCAGAAACACATGATTCCTTCTTTCAGGCAAAAGTTGCTCGAGGCTATGAAGTGTATGAATGCTTGGTGGAAGGTTGTGGGTTGAAGTTCAAGAGCTACAAAGGCCGGCATCAACATTTAGTGGACAAGCATGGATTTCCCACATCGTTTGAATTTTCAAAGAAATCAAACCCTTCCAAGAAACGGAGACATAAGGTTCAACGGAAACAAGCTACTCAGGAAAACAAAGAAGCTTCTTCTACAATGGAAGTAGACACTGAAACTATAGATGACCTCGTTACAGCAGTCTCTAAATTGACCACGTCAGGCTCCTCTCCTTCATCTATCAGGTTCGGCCATCACCGACCTCGTGGCTTGAAACTCGTCCCTCGAAGCATTAACGAGAAGAAAAAGCCAGACCTCACATCAACAGGAACAGACTAG 585 43.08 MRFKVWKIFCPIVGCGACLASLEDFEDHYIARHTASCSVCSRVYPTARLLSIHISETHDSFFQAKVARGYEVYECLVEGCGLKFKSYKGRHQHLVDKHGFPTSFEFSKKSNPSKKRRHKVQRKQATQENKEASSTMEVDTETIDDLVTAVSKLTTSGSSPSSIRFGHHRPRGLKLVPRSINEKKKPDLTSTGTD 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 224458 226400 + Conep11aG0004800.1 Cone11ag0047 447299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0047 194 ProSitePatterns Zinc finger C2H2 type domain signature. 75 98 IPR013087 -
Cone11ag0047 194 Coils Coil 115 135 - -
Cone11ag0047 194 MobiDBLite consensus disorder prediction 105 194 - -
Cone11ag0047 194 PANTHER UNCHARACTERIZED 5 184 IPR039258 -
Cone11ag0047 194 MobiDBLite consensus disorder prediction 175 194 - -
Cone11ag0047 194 SMART c2h2final6 35 58 IPR013087 -
Cone11ag0047 194 SMART c2h2final6 73 98 IPR013087 -
Cone11ag0047 194 SMART c2h2final6 8 33 IPR013087 -
Cone11ag0047 194 MobiDBLite consensus disorder prediction 147 163 - -
Cone11ag0047 194 ProSitePatterns Zinc finger C2H2 type domain signature. 37 58 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0047 Cone-Chr11:224458 Cone18ag1436 Cone-Chr18:9679187 1.85E-84 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44277 PF13561 adh_short_C2 1.10E-37 CL0063 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0047 - - - 0.0