Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone11ag0047 | ATGAGGTTCAAAGTTTGGAAGATTTTTTGTCCAATTGTTGGTTGTGGTGCATGTTTAGCTTCTTTAGAGGACTTTGAAGATCATTACATCGCACGGCACACTGCTTCATGTTCTGTTTGTTCGAGAGTCTACCCGACTGCACGACTTCTTAGTATACATATATCAGAAACACATGATTCCTTCTTTCAGGCAAAAGTTGCTCGAGGCTATGAAGTGTATGAATGCTTGGTGGAAGGTTGTGGGTTGAAGTTCAAGAGCTACAAAGGCCGGCATCAACATTTAGTGGACAAGCATGGATTTCCCACATCGTTTGAATTTTCAAAGAAATCAAACCCTTCCAAGAAACGGAGACATAAGGTTCAACGGAAACAAGCTACTCAGGAAAACAAAGAAGCTTCTTCTACAATGGAAGTAGACACTGAAACTATAGATGACCTCGTTACAGCAGTCTCTAAATTGACCACGTCAGGCTCCTCTCCTTCATCTATCAGGTTCGGCCATCACCGACCTCGTGGCTTGAAACTCGTCCCTCGAAGCATTAACGAGAAGAAAAAGCCAGACCTCACATCAACAGGAACAGACTAG | 585 | 43.08 | MRFKVWKIFCPIVGCGACLASLEDFEDHYIARHTASCSVCSRVYPTARLLSIHISETHDSFFQAKVARGYEVYECLVEGCGLKFKSYKGRHQHLVDKHGFPTSFEFSKKSNPSKKRRHKVQRKQATQENKEASSTMEVDTETIDDLVTAVSKLTTSGSSPSSIRFGHHRPRGLKLVPRSINEKKKPDLTSTGTD | 194 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 224458 | 226400 | + | Conep11aG0004800.1 | Cone11ag0047 | 447299 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone11ag0047 | 194 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 75 | 98 | IPR013087 | - | |
Cone11ag0047 | 194 | Coils | Coil | 115 | 135 | - | - | |
Cone11ag0047 | 194 | MobiDBLite | consensus disorder prediction | 105 | 194 | - | - | |
Cone11ag0047 | 194 | PANTHER | UNCHARACTERIZED | 5 | 184 | IPR039258 | - | |
Cone11ag0047 | 194 | MobiDBLite | consensus disorder prediction | 175 | 194 | - | - | |
Cone11ag0047 | 194 | SMART | c2h2final6 | 35 | 58 | IPR013087 | - | |
Cone11ag0047 | 194 | SMART | c2h2final6 | 73 | 98 | IPR013087 | - | |
Cone11ag0047 | 194 | SMART | c2h2final6 | 8 | 33 | IPR013087 | - | |
Cone11ag0047 | 194 | MobiDBLite | consensus disorder prediction | 147 | 163 | - | - | |
Cone11ag0047 | 194 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 37 | 58 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone11ag0047 | Cone-Chr11:224458 | Cone18ag1436 | Cone-Chr18:9679187 | 1.85E-84 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44277 | PF13561 | adh_short_C2 | 1.10E-37 | CL0063 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone11ag0047 | - | - | - | 0.0 |