Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0071 ATGAGACCTCCTCGAGGACGTGGTGGCGGCGGCGGTGGGTTCAGAGGCAGGGGTGATGGAGGAAGAGGTGGTGGTAGAGGTAGAGGTGGTGGTGGAGGAAGAGGAGGTGCTCCCATGAGGGGCCGTGGTGGTGGCGGCGGTCGTGGTTTCGGTGGTGGAAGAGGTAGGGGTGGCGGAAGAGGAGGTGGCATGAAGGGAGGTAGCAAAGTGATCGTCGAGCCACATAGACATGAGGGAATTTTCATCGCCAAGGGTAAAGAAGACGCTCTTGTTACTAAGAACATGGTGCCTGGTGAAGCTGTCTATAACGAGAAGCGAGTCTCTGTTCAGAATGAAGACGGAACTAAGGTTGAGTACAGAATTTGGAATCCTTTCCGGTCAAAGTTAGCAGCTGCTGTTCTTGGTGGTGTTGACAACATTTGTATTAAACCTGGTGCTCGTGTTCTCTATCTTGGAGCTGCTTCCGGAACAACTGTCTCTCATGTGTCTGATATTGTTGGCCCTGGTGGTGTGGTTTATGCTGTGGAGTTTTCTCACAGAAGTGGTAGGGATTTAGTCAACATGGCGAAGAAGCGCACAAATATTATCCCCATTATTGAAGATGCAAGACACCCTGCCAAGTACCGCATGTTGGTTGGCATGGTTGATGTCATTTTTTCTGATGTTGCTCAGCCTGATCAGGCAAGGATTCTAGCTCTCAATGCTACTTATTTCCTGAAAGCTGGAGGGCACTTTGTCATATCGATCAAGGCAAACTGCATAGACTCCACTGTCCCTGCCGAGGCAGTATTTGCAAGTGAAGTGAACAAGCTAAAAGCTGAACAGTTCAAGCCTTCCGAGCAAGTTACCCTCGAACCATTCGAGCGTGACCATGCTTGTGTCGTTGGAACATTGACTGAAATGGCTGGAGGAGGAATGATCCGGCAGTTACTGAGGAGGAAGCTTCAATCTCAATCTACTGCCCCTCCATTTTTGTCATCAGCCTTTATCTTGAAGAAATATGGTAATGGATCTGCTGGGGGCAAGTCCCTCAGAGCACTTGCCCTCATTGGAGCAGGTGTCTCAGGGCTCTTGAGTTTTGCAACAATAGCATCTGCAGATGAGGCTGAACATGGCTTGGAGTGTCCAAACTACCCCTGGCCCCACGCTGGTATTCTTAGCTCATATGACCATGCTTCGATTCGTCGCGGTCATCTGGTTTACACACAAGTTTGTGCATCTTGTCATTCTATGTCTTTGATATCATACCGTGATTTGGTTGGTGTTGCCTATACTGAAGAGGAGACAAAGGCCATGGCCGCTGAGATTGAGGTGGTTGATGGGCCCAATGATGAGGGTGAGATGTTTACTCGCCCTGGTAAGCTAAGTGATAGGTTTCCTCAACCCTATCCAAATGAACAAGCAGCTAGGTTTGCTAATGGAGGGGCCTATCCTCCAGATCTAAGTCTTATTACCAAAGCTCGCCATAATGGTCAGAACTATGTATTTGCTCTTCTTACTGGTTACCGTGAGCCCCCGGCCGGTGTTTCAATCCGAGATGGCTTGCACTATAATCCTTATTTCCCTGGTGGTGCTATTGCCATGCCTAAAATGCTTAATGATGGTGCTGTCGAGTACGAAGATGGTACCACAGCAACCGAAGCTCAGATGGGGAAAGATGTTGTATCGTTCTTGTCGTGGGCTGCAGAACCCGAAATGGAAGAGAGGAAACTGATGGGATTCAAATGGATATTCGTACTCTCTCTTGCTCTACTTCAGGCTGCCTACTATAGGCGTCTGAAGTGGTCGGTTTACAAGTCCCGTAAGATTGTGCTTGATGTGATTAACTAG 1830 48.69 MRPPRGRGGGGGGFRGRGDGGRGGGRGRGGGGGRGGAPMRGRGGGGGRGFGGGRGRGGGRGGGMKGGSKVIVEPHRHEGIFIAKGKEDALVTKNMVPGEAVYNEKRVSVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNICIKPGARVLYLGAASGTTVSHVSDIVGPGGVVYAVEFSHRSGRDLVNMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNATYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKAEQFKPSEQVTLEPFERDHACVVGTLTEMAGGGMIRQLLRRKLQSQSTAPPFLSSAFILKKYGNGSAGGKSLRALALIGAGVSGLLSFATIASADEAEHGLECPNYPWPHAGILSSYDHASIRRGHLVYTQVCASCHSMSLISYRDLVGVAYTEEETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYPNEQAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYREPPAGVSIRDGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTTATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLKWSVYKSRKIVLDVIN 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 308320 313094 + Conep11aG0007200.1 Cone11ag0071 447323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0071 609 Pfam Cytochrome C1 family 380 596 IPR002326 GO:0009055(InterPro)|GO:0020037(InterPro)
Cone11ag0071 609 PANTHER CYTOCHROME C1 306 607 IPR002326 GO:0005750(PANTHER)|GO:0006122(PANTHER)|GO:0009055(InterPro)|GO:0020037(InterPro)
Cone11ag0071 609 SMART Fibrillarin_2 72 300 IPR000692 GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro)
Cone11ag0071 609 PRINTS Fibrillarin signature 145 166 IPR000692 GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro)
Cone11ag0071 609 PRINTS Fibrillarin signature 170 187 IPR000692 GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro)
Cone11ag0071 609 PRINTS Fibrillarin signature 225 254 IPR000692 GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro)
Cone11ag0071 609 PRINTS Fibrillarin signature 118 137 IPR000692 GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro)
Cone11ag0071 609 PRINTS Fibrillarin signature 195 224 IPR000692 GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro)
Cone11ag0071 609 PRINTS Fibrillarin signature 277 298 IPR000692 GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro)
Cone11ag0071 609 PRINTS Fibrillarin signature 90 109 IPR000692 GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro)
Cone11ag0071 609 Pfam Fibrillarin 72 298 IPR000692 GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro)
Cone11ag0071 609 Gene3D - 369 564 IPR036909 GO:0009055(InterPro)|GO:0020037(InterPro)
Cone11ag0071 609 FunFam Cytochrome c1, heme protein 369 564 - -
Cone11ag0071 609 MobiDBLite consensus disorder prediction 1 69 - -
Cone11ag0071 609 FunFam Fibrillarin like 1 67 122 - -
Cone11ag0071 609 Gene3D Phosphorylase Kinase; domain 1 67 122 - -
Cone11ag0071 609 Gene3D - 565 607 - -
Cone11ag0071 609 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 564 607 IPR021157 -
Cone11ag0071 609 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 71 296 IPR029063 -
Cone11ag0071 609 Gene3D Vaccinia Virus protein VP39 123 299 IPR029063 -
Cone11ag0071 609 FunFam Cytochrome c1, heme protein, mitochondrial 565 609 - -
Cone11ag0071 609 SUPERFAMILY Cytochrome c 373 563 IPR036909 GO:0009055(InterPro)|GO:0020037(InterPro)
Cone11ag0071 609 ProSitePatterns Fibrillarin signature. 170 184 IPR020813 GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro)
Cone11ag0071 609 FunFam Fibrillarin like 1 123 300 - -
Cone11ag0071 609 Hamap Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase [flpA]. 86 299 IPR000692 GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0815 Cone-Chr14:4858734 Cone11ag0071 Cone-Chr11:308320 3.73E-100 transposed
Cone18ag1407 Cone-Chr18:9569771 Cone11ag0071 Cone-Chr11:308320 1.02E-156 transposed
Cone11ag0071 Cone-Chr11:308320 Cone18ag1406 Cone-Chr18:9566922 1.20E-196 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0071 K00413 - mdm:103442156 554.288