Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone11ag0071 | ATGAGACCTCCTCGAGGACGTGGTGGCGGCGGCGGTGGGTTCAGAGGCAGGGGTGATGGAGGAAGAGGTGGTGGTAGAGGTAGAGGTGGTGGTGGAGGAAGAGGAGGTGCTCCCATGAGGGGCCGTGGTGGTGGCGGCGGTCGTGGTTTCGGTGGTGGAAGAGGTAGGGGTGGCGGAAGAGGAGGTGGCATGAAGGGAGGTAGCAAAGTGATCGTCGAGCCACATAGACATGAGGGAATTTTCATCGCCAAGGGTAAAGAAGACGCTCTTGTTACTAAGAACATGGTGCCTGGTGAAGCTGTCTATAACGAGAAGCGAGTCTCTGTTCAGAATGAAGACGGAACTAAGGTTGAGTACAGAATTTGGAATCCTTTCCGGTCAAAGTTAGCAGCTGCTGTTCTTGGTGGTGTTGACAACATTTGTATTAAACCTGGTGCTCGTGTTCTCTATCTTGGAGCTGCTTCCGGAACAACTGTCTCTCATGTGTCTGATATTGTTGGCCCTGGTGGTGTGGTTTATGCTGTGGAGTTTTCTCACAGAAGTGGTAGGGATTTAGTCAACATGGCGAAGAAGCGCACAAATATTATCCCCATTATTGAAGATGCAAGACACCCTGCCAAGTACCGCATGTTGGTTGGCATGGTTGATGTCATTTTTTCTGATGTTGCTCAGCCTGATCAGGCAAGGATTCTAGCTCTCAATGCTACTTATTTCCTGAAAGCTGGAGGGCACTTTGTCATATCGATCAAGGCAAACTGCATAGACTCCACTGTCCCTGCCGAGGCAGTATTTGCAAGTGAAGTGAACAAGCTAAAAGCTGAACAGTTCAAGCCTTCCGAGCAAGTTACCCTCGAACCATTCGAGCGTGACCATGCTTGTGTCGTTGGAACATTGACTGAAATGGCTGGAGGAGGAATGATCCGGCAGTTACTGAGGAGGAAGCTTCAATCTCAATCTACTGCCCCTCCATTTTTGTCATCAGCCTTTATCTTGAAGAAATATGGTAATGGATCTGCTGGGGGCAAGTCCCTCAGAGCACTTGCCCTCATTGGAGCAGGTGTCTCAGGGCTCTTGAGTTTTGCAACAATAGCATCTGCAGATGAGGCTGAACATGGCTTGGAGTGTCCAAACTACCCCTGGCCCCACGCTGGTATTCTTAGCTCATATGACCATGCTTCGATTCGTCGCGGTCATCTGGTTTACACACAAGTTTGTGCATCTTGTCATTCTATGTCTTTGATATCATACCGTGATTTGGTTGGTGTTGCCTATACTGAAGAGGAGACAAAGGCCATGGCCGCTGAGATTGAGGTGGTTGATGGGCCCAATGATGAGGGTGAGATGTTTACTCGCCCTGGTAAGCTAAGTGATAGGTTTCCTCAACCCTATCCAAATGAACAAGCAGCTAGGTTTGCTAATGGAGGGGCCTATCCTCCAGATCTAAGTCTTATTACCAAAGCTCGCCATAATGGTCAGAACTATGTATTTGCTCTTCTTACTGGTTACCGTGAGCCCCCGGCCGGTGTTTCAATCCGAGATGGCTTGCACTATAATCCTTATTTCCCTGGTGGTGCTATTGCCATGCCTAAAATGCTTAATGATGGTGCTGTCGAGTACGAAGATGGTACCACAGCAACCGAAGCTCAGATGGGGAAAGATGTTGTATCGTTCTTGTCGTGGGCTGCAGAACCCGAAATGGAAGAGAGGAAACTGATGGGATTCAAATGGATATTCGTACTCTCTCTTGCTCTACTTCAGGCTGCCTACTATAGGCGTCTGAAGTGGTCGGTTTACAAGTCCCGTAAGATTGTGCTTGATGTGATTAACTAG | 1830 | 48.69 | MRPPRGRGGGGGGFRGRGDGGRGGGRGRGGGGGRGGAPMRGRGGGGGRGFGGGRGRGGGRGGGMKGGSKVIVEPHRHEGIFIAKGKEDALVTKNMVPGEAVYNEKRVSVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNICIKPGARVLYLGAASGTTVSHVSDIVGPGGVVYAVEFSHRSGRDLVNMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNATYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKAEQFKPSEQVTLEPFERDHACVVGTLTEMAGGGMIRQLLRRKLQSQSTAPPFLSSAFILKKYGNGSAGGKSLRALALIGAGVSGLLSFATIASADEAEHGLECPNYPWPHAGILSSYDHASIRRGHLVYTQVCASCHSMSLISYRDLVGVAYTEEETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYPNEQAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYREPPAGVSIRDGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTTATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLKWSVYKSRKIVLDVIN | 609 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 308320 | 313094 | + | Conep11aG0007200.1 | Cone11ag0071 | 447323 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone11ag0071 | 609 | Pfam | Cytochrome C1 family | 380 | 596 | IPR002326 | GO:0009055(InterPro)|GO:0020037(InterPro) | |
Cone11ag0071 | 609 | PANTHER | CYTOCHROME C1 | 306 | 607 | IPR002326 | GO:0005750(PANTHER)|GO:0006122(PANTHER)|GO:0009055(InterPro)|GO:0020037(InterPro) | |
Cone11ag0071 | 609 | SMART | Fibrillarin_2 | 72 | 300 | IPR000692 | GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro) | |
Cone11ag0071 | 609 | PRINTS | Fibrillarin signature | 145 | 166 | IPR000692 | GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro) | |
Cone11ag0071 | 609 | PRINTS | Fibrillarin signature | 170 | 187 | IPR000692 | GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro) | |
Cone11ag0071 | 609 | PRINTS | Fibrillarin signature | 225 | 254 | IPR000692 | GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro) | |
Cone11ag0071 | 609 | PRINTS | Fibrillarin signature | 118 | 137 | IPR000692 | GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro) | |
Cone11ag0071 | 609 | PRINTS | Fibrillarin signature | 195 | 224 | IPR000692 | GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro) | |
Cone11ag0071 | 609 | PRINTS | Fibrillarin signature | 277 | 298 | IPR000692 | GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro) | |
Cone11ag0071 | 609 | PRINTS | Fibrillarin signature | 90 | 109 | IPR000692 | GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro) | |
Cone11ag0071 | 609 | Pfam | Fibrillarin | 72 | 298 | IPR000692 | GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro) | |
Cone11ag0071 | 609 | Gene3D | - | 369 | 564 | IPR036909 | GO:0009055(InterPro)|GO:0020037(InterPro) | |
Cone11ag0071 | 609 | FunFam | Cytochrome c1, heme protein | 369 | 564 | - | - | |
Cone11ag0071 | 609 | MobiDBLite | consensus disorder prediction | 1 | 69 | - | - | |
Cone11ag0071 | 609 | FunFam | Fibrillarin like 1 | 67 | 122 | - | - | |
Cone11ag0071 | 609 | Gene3D | Phosphorylase Kinase; domain 1 | 67 | 122 | - | - | |
Cone11ag0071 | 609 | Gene3D | - | 565 | 607 | - | - | |
Cone11ag0071 | 609 | SUPERFAMILY | Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor | 564 | 607 | IPR021157 | - | |
Cone11ag0071 | 609 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 71 | 296 | IPR029063 | - | |
Cone11ag0071 | 609 | Gene3D | Vaccinia Virus protein VP39 | 123 | 299 | IPR029063 | - | |
Cone11ag0071 | 609 | FunFam | Cytochrome c1, heme protein, mitochondrial | 565 | 609 | - | - | |
Cone11ag0071 | 609 | SUPERFAMILY | Cytochrome c | 373 | 563 | IPR036909 | GO:0009055(InterPro)|GO:0020037(InterPro) | |
Cone11ag0071 | 609 | ProSitePatterns | Fibrillarin signature. | 170 | 184 | IPR020813 | GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro) | |
Cone11ag0071 | 609 | FunFam | Fibrillarin like 1 | 123 | 300 | - | - | |
Cone11ag0071 | 609 | Hamap | Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase [flpA]. | 86 | 299 | IPR000692 | GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone14ag0815 | Cone-Chr14:4858734 | Cone11ag0071 | Cone-Chr11:308320 | 3.73E-100 | transposed | |
Cone18ag1407 | Cone-Chr18:9569771 | Cone11ag0071 | Cone-Chr11:308320 | 1.02E-156 | transposed | |
Cone11ag0071 | Cone-Chr11:308320 | Cone18ag1406 | Cone-Chr18:9566922 | 1.20E-196 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone11ag0071 | K00413 | - | mdm:103442156 | 554.288 |