Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0114 ATGATCTCTGTTGATGAAGCAATGGAGGTGGCTGGTGAGAAGGGCAGCATGGAGTCGGAAAAGAAATTTCCCTTGAATGCAAAAGATTATAAGTTATATGAAGAAGTTGGGGAAGGTTTTAGCGCCTCTGTGTACAGGGCTCTTTGCATTCCACTCAATGAAATTGTTGCTATTAAGGTTCTCGATTTGGAAAAGTGCAATAATGACCTGGATGGAATACGGCGAGAGGTACAAATGATGACCCTGCTTAATCATACAAATTTATTACAAGCACATTGTTCATTCACTGCTGGCCACAGCCTTTGGGTTGTGATGCCATATATGGCTGGAGGATCCTGCCTTCATATAATGAAATCTTCGTATCCAGAAGGTTTGGAAGAGCCTGTTATAGCTACTTTGCTACGTGAGGTCCTCAAAGCTCTTGTTTATCTTCATGCCCATGGCCATATCCATAGGGATGTGAAGGCTGGTAATATTTTAATTGATTCCAATGGTGCAGTCAAGCTTGCTGACTTCGGAGTGTCAGCATGCCTGTTTGATACTGGAGACAGGCAACGTTCAAGAAATACTTTTGTTGGAACTCCTTGCTGGATGGCTCCTGAGGTCATGCAACAATTACATGGATATGACTTCAAGGCAGACATCTGGTCATTTGGAATAACAGCACTTGAACTTGCCCATGGTCATGCCCCGTTCTCCAAATATCCGCCAATGAAAGTTTTGCTAATGACTTTACAAAATGCACCTCCTGGTCTTGATTATGAAAGAGACAAGAGATTTTCAAAGTCCTTCAAAGAGATGGTGTCTGCATGCTTAGTGAAGGATCCAAAGAAACGTCCCACTTCGGAGAAGCTTCTGAAACATTCTTTCTTCAAGAATGGACGATCAAATGAATATCTCACTCGCACCATTCTTGATGGTCTTGCGCCCCTTGGTGATCGTTTTAAGATGTTGAAGGCAGAGGAGGCTGATCTTCTTGGGCAAAACAAGGTTTTATATGGAGATAAAGAACAATTATCACAGCAAGAGTATATTCGAGGAATCAGTGCCTGGAACTTCAACCTTGAGGATTTAAAAAGTCAAGCTGCCCTTATTCAGGATGACAGTATCACAGTTGCAGAGGATTCAAATGTATATAAGAAGCAAAGAGGCAAGAATGATGAATTTGGATTTCATGTAGAGAAGCCATCCCCGGAAAGTTTGTACCATTTAAACTCTACACCCAGTCAAGAGGATGGGTCAGATGATTTTAGCGATTTAGAGGGTTCGCTTGCCTCACTTCCTATTAAACCTCTTAAAGCACTTAAAGGTTGTTTTGACACTTGTGAGGATGATGTAAATATAAATAGCCCAAGAGCTATGGATCTAGAAAATGGAAAAGCTCAGGGTGAGAGTTCAAGGGACTGTAATTCACTACCACGTAATACTGGTGATTTAAAAAAGAATTTTAGCTGTTCACTACTACCGGATCAGGTTAATTCTCCTAAAAAGGCTACTGCTGATAATGAGAGGGATTATCCGAAATATCCGCCTGATCGAAACTACAGTGGTCAATTGATTTACCGCCAGAAGAGAGATACTTACAACCCTTCCAATGTTGAGGATAAATCAGAAGGAGCTGTTGTTCAACGTAAAGGGCGGTTCAAAGTTACTTCCGCAGATCTCAGTCCTAAAGGTCCCACAGCCGGCTCATTTAATGCTGTTTATGGATCTTCAACCAGTCCGACGAACTTATCAGCCGGCTCAATTCTCCCATCACTTCAATTTATTTTGCAGCAGAATACCCTGCAAAGGGAAGAAGTTATTAGATTGATCAAGTATCTGGAACAAACCTCTGGGAAGCAAGCAGAGTCAGCTGAGGGGGGCAGTAGTGACCTTTTGCAGATACCTCCTGCTTCCTCTAGGGAGAAGGAATTGCAGTCTCAAGTGATTTATCTACAACAGAGTATTGGAAGCCTTGCCGAGGAACTAGAGAGAAACAGGTTGAAAAATGCCCAGTTAGAAAGACGATTAAACGCTGTGATGAAAAAAGAGGAAGAAATGGGAGAAAATGAAGCGTGA 2061 42.07 MISVDEAMEVAGEKGSMESEKKFPLNAKDYKLYEEVGEGFSASVYRALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQMMTLLNHTNLLQAHCSFTAGHSLWVVMPYMAGGSCLHIMKSSYPEGLEEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILIDSNGAVKLADFGVSACLFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKEMVSACLVKDPKKRPTSEKLLKHSFFKNGRSNEYLTRTILDGLAPLGDRFKMLKAEEADLLGQNKVLYGDKEQLSQQEYIRGISAWNFNLEDLKSQAALIQDDSITVAEDSNVYKKQRGKNDEFGFHVEKPSPESLYHLNSTPSQEDGSDDFSDLEGSLASLPIKPLKALKGCFDTCEDDVNINSPRAMDLENGKAQGESSRDCNSLPRNTGDLKKNFSCSLLPDQVNSPKKATADNERDYPKYPPDRNYSGQLIYRQKRDTYNPSNVEDKSEGAVVQRKGRFKVTSADLSPKGPTAGSFNAVYGSSTSPTNLSAGSILPSLQFILQQNTLQREEVIRLIKYLEQTSGKQAESAEGGSSDLLQIPPASSREKELQSQVIYLQQSIGSLAEELERNRLKNAQLERRLNAVMKKEEEMGENEA 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 504731 511681 - Conep11aG0011700.1 Cone11ag0114 447366

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0114 686 CDD STKc_OSR1_SPAK 28 291 - -
Cone11ag0114 686 Gene3D Phosphorylase Kinase; domain 1 19 106 - -
Cone11ag0114 686 FunFam Serine/threonine-protein kinase BLUS1 19 107 - -
Cone11ag0114 686 Coils Coil 650 684 - -
Cone11ag0114 686 ProSitePatterns Protein kinases ATP-binding region signature. 36 59 IPR017441 GO:0005524(InterPro)
Cone11ag0114 686 MobiDBLite consensus disorder prediction 387 422 - -
Cone11ag0114 686 ProSiteProfiles Protein kinase domain profile. 30 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone11ag0114 686 Gene3D Transferase(Phosphotransferase) domain 1 111 313 - -
Cone11ag0114 686 MobiDBLite consensus disorder prediction 614 634 - -
Cone11ag0114 686 Pfam Protein kinase domain 30 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone11ag0114 686 SMART serkin_6 30 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone11ag0114 686 MobiDBLite consensus disorder prediction 456 475 - -
Cone11ag0114 686 MobiDBLite consensus disorder prediction 490 515 - -
Cone11ag0114 686 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 20 667 IPR047173 GO:0043539(InterPro)
Cone11ag0114 686 FunFam serine/threonine-protein kinase BLUS1 isoform X1 111 344 - -
Cone11ag0114 686 SUPERFAMILY Protein kinase-like (PK-like) 27 317 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0114 K08835 - - csv:101205102 969.148
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0114 Cone-Chr11:504731 Cone17ag0279 Cone-Chr17:1338830 4.23E-190 dispersed
Cone11ag0114 Cone-Chr11:504731 Cone18ag1363 Cone-Chr18:9363976 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1350 . . Bda01g01279 Bda13g01619 Bpe02g01494 Bpe14g00247 . . . . . . . . Sed02g1388 . Cpe13g00900 Bhi06g00518 Tan11g0629 Cmetu09g0153 . . . . . . . . . . . Cone11ag0114 Cone18ag1363 . . Lsi02g01568 Csa05g01916 . . Blo17g00301 Blo18g00333 . . . . Bma01g00975 . . Cmo04g02836 Cmo15g00350 Cma04g02707 Cma15g00341 Car04g02610 Car15g00325 . Cpe01g02349 . . . . . . . Cla09g01858 Cam09g1954 Cec09g2018 Cco09g2111 . . . . . Chy09g00338 Cme09g00387
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone14ag1056 . 1 681 MAP Kinase Kinase Kinase Kinase AT1G53165 60.0 4.4e-211 731.9
Cone9ag0187 . 1 687 MAP Kinase Kinase Kinase Kinase AT1G53165 59.1 2.7e-208 722.6
Cone6ag0161 . 9 685 MAP Kinase Kinase Kinase Kinase AT1G53165 58.8 6.1e-205 711.4
Cone13ag0901 . 259 515 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 2.4e-68 257.7
Cone19ag0899 . 260 516 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 2.4e-68 257.7
Cone9ag0187 . 1 686 MAP Kinase Kinase Kinase Kinase AT3G15220 61.8 2.5e-222 769.2
Cone14ag1056 . 1 680 MAP Kinase Kinase Kinase Kinase AT3G15220 61.3 4.7e-221 765.0
Cone6ag0161 . 9 684 MAP Kinase Kinase Kinase Kinase AT3G15220 61.5 1.3e-218 756.9
Cone13ag0901 . 260 515 MAP Kinase Kinase Kinase Kinase AT3G15220 52.5 5.4e-68 256.5
Cone19ag0899 . 261 516 MAP Kinase Kinase Kinase Kinase AT3G15220 52.5 5.4e-68 256.5
Cone13ag0901 . 1 833 MAP Kinase Kinase Kinase Kinase AT1G69220 60.1 1.1e-248 857.1
Cone19ag0899 . 8 834 MAP Kinase Kinase Kinase Kinase AT1G69220 59.1 2.0e-247 852.8
Cone6ag0161 . 23 271 MAP Kinase Kinase Kinase Kinase AT1G69220 53.2 2.2e-68 258.1
Cone9ag0187 . 23 271 MAP Kinase Kinase Kinase Kinase AT1G69220 52.4 2.2e-68 258.1
Cone14ag1056 . 23 267 MAP Kinase Kinase Kinase Kinase AT1G69220 52.4 9.2e-67 252.7
Cone18ag1363 . 3 663 MAP Kinase Kinase Kinase Kinase AT5G14720 66.6 3.7e-247 851.7
Cone11ag0114 . 19 679 MAP Kinase Kinase Kinase Kinase AT5G14720 66.3 7.0e-246 847.4
Cone8ag0549 . 8 724 MAP Kinase Kinase Kinase Kinase AT4G24100 64.5 4.4e-246 848.2
Cone12ag0550 . 8 723 MAP Kinase Kinase Kinase Kinase AT4G24100 64.4 6.4e-245 844.3
Cone12ag0550 . 11 724 MAP Kinase Kinase Kinase Kinase AT4G10730 65.7 5.3e-249 857.8
Cone8ag0549 . 11 725 MAP Kinase Kinase Kinase Kinase AT4G10730 65.8 1.2e-248 856.7
Cone20ag1129 . 4 368 MAP Kinase Kinase Kinase Kinase AT1G70430 60.5 4.0e-128 456.1
Cone17ag0279 . 4 348 MAP Kinase Kinase Kinase Kinase AT1G70430 62.9 2.0e-127 453.8
Cone18ag0623 . 4 479 MAP Kinase Kinase Kinase Kinase AT1G70430 50.6 6.4e-126 448.7
Cone11ag0941 . 4 407 MAP Kinase Kinase Kinase Kinase AT1G70430 55.4 7.1e-125 445.3
Cone12ag0550 . 5 353 MAP Kinase Kinase Kinase Kinase AT1G70430 58.5 8.4e-118 421.8
Cone8ag0549 . 5 367 MAP Kinase Kinase Kinase Kinase AT1G70430 55.9 8.7e-115 411.8
Cone17ag0279 . 1 631 MAP Kinase Kinase Kinase Kinase AT1G79640 59.1 7.0e-206 714.5
Cone20ag1129 . 1 631 MAP Kinase Kinase Kinase Kinase AT1G79640 58.1 2.0e-205 713.0
Cone18ag0623 . 1 655 MAP Kinase Kinase Kinase Kinase AT1G79640 57.8 1.3e-204 710.3
Cone11ag0941 . 1 655 MAP Kinase Kinase Kinase Kinase AT1G79640 57.5 2.8e-199 692.6
Cone11ag0114 . 20 342 MAP Kinase Kinase Kinase Kinase AT1G23700 59.5 8.9e-102 368.2
Cone18ag1363 . 4 326 MAP Kinase Kinase Kinase Kinase AT1G23700 58.6 4.1e-99 359.4
Cone11ag0941 . 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.6 2.4e-86 317.0
Cone17ag0279 . 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.6 6.9e-86 315.5
Cone18ag0623 . 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.0 1.2e-85 314.7
Cone20ag1129 . 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.0 3.4e-85 313.2
Cone12ag0550 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.2 3.2e-75 280.0
Cone4ag0304 . 15 493 MAP Kinase Kinase Kinase Kinase AT4G14480 56.6 1.0e-137 487.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003111 2 8 2 1 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81863 PF00240 ubiquitin 2.20E-06 CL0072 Cone PK