Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0114 ATGATCTCTGTTGATGAAGCAATGGAGGTGGCTGGTGAGAAGGGCAGCATGGAGTCGGAAAAGAAATTTCCCTTGAATGCAAAAGATTATAAGTTATATGAAGAAGTTGGGGAAGGTTTTAGCGCCTCTGTGTACAGGGCTCTTTGCATTCCACTCAATGAAATTGTTGCTATTAAGGTTCTCGATTTGGAAAAGTGCAATAATGACCTGGATGGAATACGGCGAGAGGTACAAATGATGACCCTGCTTAATCATACAAATTTATTACAAGCACATTGTTCATTCACTGCTGGCCACAGCCTTTGGGTTGTGATGCCATATATGGCTGGAGGATCCTGCCTTCATATAATGAAATCTTCGTATCCAGAAGGTTTGGAAGAGCCTGTTATAGCTACTTTGCTACGTGAGGTCCTCAAAGCTCTTGTTTATCTTCATGCCCATGGCCATATCCATAGGGATGTGAAGGCTGGTAATATTTTAATTGATTCCAATGGTGCAGTCAAGCTTGCTGACTTCGGAGTGTCAGCATGCCTGTTTGATACTGGAGACAGGCAACGTTCAAGAAATACTTTTGTTGGAACTCCTTGCTGGATGGCTCCTGAGGTCATGCAACAATTACATGGATATGACTTCAAGGCAGACATCTGGTCATTTGGAATAACAGCACTTGAACTTGCCCATGGTCATGCCCCGTTCTCCAAATATCCGCCAATGAAAGTTTTGCTAATGACTTTACAAAATGCACCTCCTGGTCTTGATTATGAAAGAGACAAGAGATTTTCAAAGTCCTTCAAAGAGATGGTGTCTGCATGCTTAGTGAAGGATCCAAAGAAACGTCCCACTTCGGAGAAGCTTCTGAAACATTCTTTCTTCAAGAATGGACGATCAAATGAATATCTCACTCGCACCATTCTTGATGGTCTTGCGCCCCTTGGTGATCGTTTTAAGATGTTGAAGGCAGAGGAGGCTGATCTTCTTGGGCAAAACAAGGTTTTATATGGAGATAAAGAACAATTATCACAGCAAGAGTATATTCGAGGAATCAGTGCCTGGAACTTCAACCTTGAGGATTTAAAAAGTCAAGCTGCCCTTATTCAGGATGACAGTATCACAGTTGCAGAGGATTCAAATGTATATAAGAAGCAAAGAGGCAAGAATGATGAATTTGGATTTCATGTAGAGAAGCCATCCCCGGAAAGTTTGTACCATTTAAACTCTACACCCAGTCAAGAGGATGGGTCAGATGATTTTAGCGATTTAGAGGGTTCGCTTGCCTCACTTCCTATTAAACCTCTTAAAGCACTTAAAGGTTGTTTTGACACTTGTGAGGATGATGTAAATATAAATAGCCCAAGAGCTATGGATCTAGAAAATGGAAAAGCTCAGGGTGAGAGTTCAAGGGACTGTAATTCACTACCACGTAATACTGGTGATTTAAAAAAGAATTTTAGCTGTTCACTACTACCGGATCAGGTTAATTCTCCTAAAAAGGCTACTGCTGATAATGAGAGGGATTATCCGAAATATCCGCCTGATCGAAACTACAGTGGTCAATTGATTTACCGCCAGAAGAGAGATACTTACAACCCTTCCAATGTTGAGGATAAATCAGAAGGAGCTGTTGTTCAACGTAAAGGGCGGTTCAAAGTTACTTCCGCAGATCTCAGTCCTAAAGGTCCCACAGCCGGCTCATTTAATGCTGTTTATGGATCTTCAACCAGTCCGACGAACTTATCAGCCGGCTCAATTCTCCCATCACTTCAATTTATTTTGCAGCAGAATACCCTGCAAAGGGAAGAAGTTATTAGATTGATCAAGTATCTGGAACAAACCTCTGGGAAGCAAGCAGAGTCAGCTGAGGGGGGCAGTAGTGACCTTTTGCAGATACCTCCTGCTTCCTCTAGGGAGAAGGAATTGCAGTCTCAAGTGATTTATCTACAACAGAGTATTGGAAGCCTTGCCGAGGAACTAGAGAGAAACAGGTTGAAAAATGCCCAGTTAGAAAGACGATTAAACGCTGTGATGAAAAAAGAGGAAGAAATGGGAGAAAATGAAGCGTGA 2061 42.07 MISVDEAMEVAGEKGSMESEKKFPLNAKDYKLYEEVGEGFSASVYRALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQMMTLLNHTNLLQAHCSFTAGHSLWVVMPYMAGGSCLHIMKSSYPEGLEEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILIDSNGAVKLADFGVSACLFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKEMVSACLVKDPKKRPTSEKLLKHSFFKNGRSNEYLTRTILDGLAPLGDRFKMLKAEEADLLGQNKVLYGDKEQLSQQEYIRGISAWNFNLEDLKSQAALIQDDSITVAEDSNVYKKQRGKNDEFGFHVEKPSPESLYHLNSTPSQEDGSDDFSDLEGSLASLPIKPLKALKGCFDTCEDDVNINSPRAMDLENGKAQGESSRDCNSLPRNTGDLKKNFSCSLLPDQVNSPKKATADNERDYPKYPPDRNYSGQLIYRQKRDTYNPSNVEDKSEGAVVQRKGRFKVTSADLSPKGPTAGSFNAVYGSSTSPTNLSAGSILPSLQFILQQNTLQREEVIRLIKYLEQTSGKQAESAEGGSSDLLQIPPASSREKELQSQVIYLQQSIGSLAEELERNRLKNAQLERRLNAVMKKEEEMGENEA 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 504731 511681 - Conep11aG0011700.1 Cone11ag0114 447366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0114 686 CDD STKc_OSR1_SPAK 28 291 - -
Cone11ag0114 686 Gene3D Phosphorylase Kinase; domain 1 19 106 - -
Cone11ag0114 686 FunFam Serine/threonine-protein kinase BLUS1 19 107 - -
Cone11ag0114 686 Coils Coil 650 684 - -
Cone11ag0114 686 ProSitePatterns Protein kinases ATP-binding region signature. 36 59 IPR017441 GO:0005524(InterPro)
Cone11ag0114 686 MobiDBLite consensus disorder prediction 387 422 - -
Cone11ag0114 686 ProSiteProfiles Protein kinase domain profile. 30 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone11ag0114 686 Gene3D Transferase(Phosphotransferase) domain 1 111 313 - -
Cone11ag0114 686 MobiDBLite consensus disorder prediction 614 634 - -
Cone11ag0114 686 Pfam Protein kinase domain 30 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone11ag0114 686 SMART serkin_6 30 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone11ag0114 686 MobiDBLite consensus disorder prediction 456 475 - -
Cone11ag0114 686 MobiDBLite consensus disorder prediction 490 515 - -
Cone11ag0114 686 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 20 667 IPR047173 GO:0043539(InterPro)
Cone11ag0114 686 FunFam serine/threonine-protein kinase BLUS1 isoform X1 111 344 - -
Cone11ag0114 686 SUPERFAMILY Protein kinase-like (PK-like) 27 317 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0114 Cone-Chr11:504731 Cone17ag0279 Cone-Chr17:1338830 4.23E-190 dispersed
Cone11ag0114 Cone-Chr11:504731 Cone18ag1363 Cone-Chr18:9363976 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81863 PF00240 ubiquitin 2.20E-06 CL0072 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0114 K08835 - csv:101205102 969.148