Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0116 ATGCTTGCTCTGAAATTCACTCCGTCATCGCCATTGCTTGGAAGCGGTTTCTCTTCTTCATTTTGGGGCAGATATCTGTGTTTCAGCTGCAATGGAGGTTCGGTGAGCAGTCCAAAACTTATGGCTCGGTTTAATGGTGGAGGTTTTAGGATTCTCGCTATGTCAAGTGGTGGTTCTTCTTCTTCGTTTAAAATGAACCTCAACGAGTACATGGTTACTCTCGAAAAGCCTCTTGGTATTCGGTTTGCGCTCTCGATCGACGGGAAAATCTTCGTTGATGCACTTAAGAAAGGGGGTAATGCTGAGAAGTCAAGGATAATAATGGTGGGTGACACTTTGAAGAAGGCTAGTGATTCGTCTGGCAGCAAGCTTATTGAGATCATGGATTTTACTGATATAGAGAAGATGCTGAAGGAGAAATCAGGATCTCTTAGCATGGTTCTGGAAAGACCATTCACCCCCTTTCCAATTCAACAACTTCCTCCTTTAAGTGATTATGATATCTTATTTAATAGAGGTCGAGTATCTATTGCCACTTGGAACAATGATATATTGGCTTCTAATTGGCAAGCATCTTCTGAAAGTAGTGGGAACTCTGGGTTTGTGTTTTTCTCCTCAAAGATTGCATCGGTACAAGGATGGAAAGTCCTGAACAAACAAAATGGAGCTGTAAGATCACAAATGCAGAGGCAGAGTTTGTCCCCTCCGATTAGCCATGTCGTTAGCATCTTATCAGAAGATGAGTCAGGAGATGGAGAATGGGGTCATGGGAGCTTTCCACTCGAGGAATATATTAAGGCAGAAGGAAGGTCTAAGGACGAACTGTACTATGATCACTCTCTTGGTATGCGCTTCAGCAAGATTACAGAGCAGATATATGTCGGATCATGTGTGCAGACTGAAGATGATGTGGAGACCTTATCAAACAAGGTGGGAATCGCTGCCATATTAAATTTTCAAAGTGGAATTGAAACAGAAAATTGGGGAGTCAATTCCAAGTTAATCAATGACTCATGTCAAAGATTTGATATACTCATGATCAATTATCCTATAAGGGAGGGAGATTCTTATGATTTGAGGAAGAAGCTACCATTTTGTGCTGGTCTTCTACTATGCTTGTTAAAAAAGAATCACTGTGTTTTTGTGACTTGTACTACTGGTTTTGATCGATCTCCTGCTTCTGTAATTGCATACCTGCACTGGATGACCGATACTTCCCTTCACGCAGCTTATAATTATGTCACCAGTTTGCATTTATGCAAGCCTGACAGGGCAGCTATTGCTTCAGCTACATGGGATCTCATATCTATGGTGGAAAATGGAAGGCGTGGTGGGCCTGCTACACATGTTGTGACCTTTGTGTGGAATGGGCATGAGCATTCAACAGCTTCACCCTCAGAAAGGGATGAAAGGAGGAATGTTAACAATGTAATTCATATCGGCGACACTGCTAGTGTGAGGCCTTCTGTTCGCAGGCAAGAGAAAGATGCCAACATTATCAAGGTGATTGAGAGGCCACTGACCGAAAACGAACGCTTCATGCTGGCAAAAGCTGCTCGTTGCATTGCGTTTTCTGTTTGTCCCATCAGACTAGCTCCCAAGTAG 1605 42.87 MLALKFTPSSPLLGSGFSSSFWGRYLCFSCNGGSVSSPKLMARFNGGGFRILAMSSGGSSSSFKMNLNEYMVTLEKPLGIRFALSIDGKIFVDALKKGGNAEKSRIIMVGDTLKKASDSSGSKLIEIMDFTDIEKMLKEKSGSLSMVLERPFTPFPIQQLPPLSDYDILFNRGRVSIATWNNDILASNWQASSESSGNSGFVFFSSKIASVQGWKVLNKQNGAVRSQMQRQSLSPPISHVVSILSEDESGDGEWGHGSFPLEEYIKAEGRSKDELYYDHSLGMRFSKITEQIYVGSCVQTEDDVETLSNKVGIAAILNFQSGIETENWGVNSKLINDSCQRFDILMINYPIREGDSYDLRKKLPFCAGLLLCLLKKNHCVFVTCTTGFDRSPASVIAYLHWMTDTSLHAAYNYVTSLHLCKPDRAAIASATWDLISMVENGRRGGPATHVVTFVWNGHEHSTASPSERDERRNVNNVIHIGDTASVRPSVRRQEKDANIIKVIERPLTENERFMLAKAARCIAFSVCPIRLAPK 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 520866 524839 + Conep11aG0011900.1 Cone11ag0116 447368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0116 534 CDD DSP_laforin-like 283 429 IPR045204 GO:0019203(InterPro)
Cone11ag0116 534 Gene3D Protein tyrosine phosphatase superfamily 273 449 IPR029021 -
Cone11ag0116 534 ProSiteProfiles PDZ domain profile. 71 152 IPR001478 GO:0005515(InterPro)
Cone11ag0116 534 SUPERFAMILY PDZ domain-like 57 157 IPR036034 GO:0005515(InterPro)
Cone11ag0116 534 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 277 417 IPR029021 -
Cone11ag0116 534 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 460 528 - GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0043036(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0116 Cone-Chr11:520866 Cone18ag1361 Cone-Chr18:9351572 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0116 - - - 0.0