Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0120 ATGAAGGAGAAGAGTGAAAGTGGAGGTGGTGGTGGAGGTTATGTAAGGGCGGATCAGATAGATCTGAAAAGCTTGGATGAACAACTGCAGAGGCATCTAAATAGAGCTTTGACTATGGAGAAGAACAAGAACAAGGCAGCAGAAGAGGCAGAGGAAGAAGAAGCAGCAGCAGCAGCAGCAGCAGAGCAAGTTGTAGTGCAAAAGAGGAATAAAACCACGAGGCAAGAATGGGAGATTGACCCTTCAAAATTAATCATCAAATCTGTCATAGCTCGTGGCACTTTTGGCACTGTTCATCGTGGAATCTACGATGGTCTAGATGTTGCTGTTAAACTTCTTGATTGGGGTGAAGAAGGTCACAGATCGGATGCCGAAATAGCTTCTCTTAGAGCAGCTTTTATTCAAGAAGTTGCTGTTTGGCACAAGCTTGACCATCCTAATGTAAACAAGTTCATAGGTGCAACAATGGGCTCATCGGGCTTACATTTACAAACCGAAAATGGCCAAATAGGCATGCCAAGCAATCTTTGTTGTGTAGTCATTGAATACTGTCCGGGTGGTGCTTTAAAATCTTACCTCATAAAGAACAGGAGAAGAAAGCTCGCTTTCAAAGTAGTTGTCCAACTAGCTCTAGACCTTGCAAGAGGGTTGAGTTATCTTCATTCGAAGAAGATAGTCCATAGAGATGTTAAAACCGAAAACATGCTTCTGGATAAAACACGTACGCTCAAAATTGCCGATTTTGGCGTTGCTCGTATTGAGGCCTCAAATCCTCATGACATGACTGGTGAAACTGGAACCTTAGGCTACATGGCTCCAGAGGTTCTTAATGGAAATCCGTATAATAGAAAATGTGATGTGTATAGTTTTGGAATCTGCTTATGGGAGATATATTGTTGTGACATGCCTTATCCTGACCTTAGCTTCTCCGAAGTGACATCAGCAGTTGTCCGTCAGAATCTGAGGCCGGAGATTCCTCGTTGTTGCCCGGGTTCTCTTGCAATGGTAATGAAGAGATGTTGGGATGCTAATCCGGACAAGCGACCGGAGATGGATTATGTGGTGGCCATGTTGGAAGCAATTGATACCTCTAAAGGGGGAGGTATGATCCCTCTTGATCAGCCTCAAGGTTGTTTCTGTTTCCATAGGTACCGAGGCCCGTGA 1164 44.24 MKEKSESGGGGGGYVRADQIDLKSLDEQLQRHLNRALTMEKNKNKAAEEAEEEEAAAAAAAEQVVVQKRNKTTRQEWEIDPSKLIIKSVIARGTFGTVHRGIYDGLDVAVKLLDWGEEGHRSDAEIASLRAAFIQEVAVWHKLDHPNVNKFIGATMGSSGLHLQTENGQIGMPSNLCCVVIEYCPGGALKSYLIKNRRRKLAFKVVVQLALDLARGLSYLHSKKIVHRDVKTENMLLDKTRTLKIADFGVARIEASNPHDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPGSLAMVMKRCWDANPDKRPEMDYVVAMLEAIDTSKGGGMIPLDQPQGCFCFHRYRGP 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 540829 543764 + Conep11aG0012300.1 Cone11ag0120 447372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0120 387 SMART serkin_6 84 361 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone11ag0120 387 Gene3D Phosphorylase Kinase; domain 1 72 167 - -
Cone11ag0120 387 Gene3D Transferase(Phosphotransferase) domain 1 184 369 - -
Cone11ag0120 387 FunFam Kinase suppressor of Ras 1 73 168 - -
Cone11ag0120 387 PRINTS Tyrosine kinase catalytic domain signature 219 237 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone11ag0120 387 PRINTS Tyrosine kinase catalytic domain signature 181 194 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone11ag0120 387 PRINTS Tyrosine kinase catalytic domain signature 285 307 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone11ag0120 387 PRINTS Tyrosine kinase catalytic domain signature 329 351 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone11ag0120 387 Pfam Protein tyrosine and serine/threonine kinase 86 357 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone11ag0120 387 SUPERFAMILY Protein kinase-like (PK-like) 67 358 IPR011009 -
Cone11ag0120 387 Coils Coil 22 63 - -
Cone11ag0120 387 FunFam Serine/threonine-protein kinase HT1 184 369 - -
Cone11ag0120 387 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 57 359 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
Cone11ag0120 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone11ag0120 387 CDD STKc_MAP3K-like 90 358 - -
Cone11ag0120 387 ProSiteProfiles Protein kinase domain profile. 84 361 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0120 Cone-Chr11:540829 Cone2ag0900 Cone-Chr2:34824127 1.57E-228 dispersed
Cone3ag1395 Cone-Chr3:32854304 Cone11ag0120 Cone-Chr11:540829 8.49E-110 transposed
Cone11ag0120 Cone-Chr11:540829 Cone13ag0137 Cone-Chr13:792263 3.82E-63 wgd
Cone11ag0120 Cone-Chr11:540829 Cone16ag0263 Cone-Chr16:2923665 7.41E-70 wgd
Cone11ag0120 Cone-Chr11:540829 Cone18ag1359 Cone-Chr18:9340188 9.34E-268 wgd
Cone11ag0120 Cone-Chr11:540829 Cone19ag0138 Cone-Chr19:746743 1.76E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81864 PF13041 PPR_2 1.10E-11 CL0020 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0120 - - - 0.0