Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0141 ATGAGGATCAGTATCCGTTTGATCGTATTCGTAGTAGCTGTGCTTCTTCTAGGTCTTTCTGCTTGTTTTGGAGTTGTAGAAGATGATGAGAAGTGCCTCGAAGGCGTGAAGAACTCTCTGGCGGGGTCGACGGAAACTCTGAGCTCATGGGAGTTCGGAAACACTACGTTAGGTTACGTCTGCAAATTCATCGGAGTTACTTGCTGGAACGACAGAGAAAATCGGATAATCAAACTCGGCCTTCCTCAAATGGGGCTTTCCGGTACTCTTCCAGACGTTCTTCAGTACTGTGGCAACATGCAGATCTTAGATCTCTCCGAAAATAAACTATCAGGCTCGATCCCGTCTGATATATGCAAGTGGCTGCCATTTTTAGTAACTTTAGATTTGTCCAATAATGATTTATCTGGCTCTATACCACCTGATCTCGCAAACTGTACGTACCTGAATAACCTGCGATTGTCAAATAATCGCCTCTCTGGTACTATACCTTATGAATTTACTACTTTAAGTAGGCTTATTGAGTTTTCTGTTGAGTATAATGATCTTAGTGGTACAGTTCCATCAGCTTTTAGTAAGTTTGATAAGGATAATTTTGAAGGAAATAGTGGACTTTGTGGTGGTCCGCTTGGATCAAAGTGTGGTGGATTGAGTAAGAAAAATCTTGCAATTATAATTGCTGCTGGAGTTTTTGGAGCTGCAATGTCTTTGTTATTGGCTTTTGGATTATGGTGGTGGTTTCATTTGAGGTTGGGTGTGAAAAGACAAGGAGTAGGTGTGTTTGGAAGCGGTGGTTGGGTTTCTAGGTTGAGGGCTCATAGACTGACTCAAGTGTCTTTGTTTCAAAAACCGTTAGTGAAGGTCAAATTGGCAGATCTAATGGCGGCTACTAACAATTTCAGTTCGGAAAATATAATTGTTTCGACTAGAATGGGGACTACTTATAAAGCTGTTCTTCCCGACGGATCTGCATTAGCAATAAAACGGCTTAATACTTGTAAGCTCAGGGAGAAGCAGTTTCATACGGAGATGAATTGGTTAGGGCAGTTAAGGCACCCTAATTTGACTCCACTTTTGGGTTTTTGTGTTGTGGAAGAAGAGAAGCTTTTGCTTTATAAGTACATGTCTAATGGGACTCTGTATTCCTTGTTGCATGGAAGTGGGGGGGAGAAGTTGGATTGGCCGACTAGGTTTCGGATTGCCTTAGGTGCAGCAAGAGGTCTTGCTTGGCTGCATCATGGGAACGAGCCTCCTTTCATGCATCGGAATATAAGTTCAAATGTGATTCTTGTTGATGAAGATTATGATGCTAGGATAATGGACTTTGGATTGGCAAAGCTTATGGCTAACGATGCTCGTGAGAGTAGTTTCATCAATGGGGACTTGGGCGAACTTGGTTATATCGCTCCAGAGTATTCATCCACCATGGTTGCTTCACTAAAAGGAGATGTATATGGATTTGGCGTAGTTCTTCTAGAGCTGGTGACAGGGCAAAAACCTCTTGAAGTCATCAATGCTGATGAAGGGTACAAGGGTAATTTGGTAGATTGGGTCAATACTCTCTGTAGTTCTGGTCGATTCAAGGATGCCATTGACAGAGATCTTTGCGGAAAGGGAAATGATGAGGAAATTGTTCAGGTCCTGAAAATTTCTTGTAACTGTGTGAGTCCTCATCCCAAGGATAGGTGGTCTATGTACCAGATCTATGATTCACTGAAGAGTGTGGCTAAAGATGACTCCTTCTCTCAACTGGATAATGAATTTCCGCTGCTTTCTGGCAAGCAGGAAAACGACTCTGTGTGA 1803 42.48 MRISIRLIVFVVAVLLLGLSACFGVVEDDEKCLEGVKNSLAGSTETLSSWEFGNTTLGYVCKFIGVTCWNDRENRIIKLGLPQMGLSGTLPDVLQYCGNMQILDLSENKLSGSIPSDICKWLPFLVTLDLSNNDLSGSIPPDLANCTYLNNLRLSNNRLSGTIPYEFTTLSRLIEFSVEYNDLSGTVPSAFSKFDKDNFEGNSGLCGGPLGSKCGGLSKKNLAIIIAAGVFGAAMSLLLAFGLWWWFHLRLGVKRQGVGVFGSGGWVSRLRAHRLTQVSLFQKPLVKVKLADLMAATNNFSSENIIVSTRMGTTYKAVLPDGSALAIKRLNTCKLREKQFHTEMNWLGQLRHPNLTPLLGFCVVEEEKLLLYKYMSNGTLYSLLHGSGGEKLDWPTRFRIALGAARGLAWLHHGNEPPFMHRNISSNVILVDEDYDARIMDFGLAKLMANDARESSFINGDLGELGYIAPEYSSTMVASLKGDVYGFGVVLLELVTGQKPLEVINADEGYKGNLVDWVNTLCSSGRFKDAIDRDLCGKGNDEEIVQVLKISCNCVSPHPKDRWSMYQIYDSLKSVAKDDSFSQLDNEFPLLSGKQENDSV 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 632792 635713 + Conep11aG0014400.1 Cone11ag0141 447393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0141 600 Pfam Protein tyrosine and serine/threonine kinase 314 514 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone11ag0141 600 PANTHER RECEPTOR-LIKE PROTEIN 55 75 572 - -
Cone11ag0141 600 Gene3D Phosphorylase Kinase; domain 1 261 374 - -
Cone11ag0141 600 SUPERFAMILY Protein kinase-like (PK-like) 278 572 IPR011009 -
Cone11ag0141 600 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Cone11ag0141 600 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 375 594 - -
Cone11ag0141 600 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 262 374 - -
Cone11ag0141 600 SUPERFAMILY L domain-like 32 197 - -
Cone11ag0141 600 Gene3D Transferase(Phosphotransferase) domain 1 375 592 - -
Cone11ag0141 600 Pfam Leucine Rich Repeat 149 170 IPR001611 GO:0005515(InterPro)
Cone11ag0141 600 Pfam Leucine Rich Repeat 125 146 IPR001611 GO:0005515(InterPro)
Cone11ag0141 600 Pfam Leucine Rich Repeat 99 120 IPR001611 GO:0005515(InterPro)
Cone11ag0141 600 FunFam Nuclear pore complex protein NUP107 26 189 - -
Cone11ag0141 600 Pfam Leucine rich repeat N-terminal domain 27 69 IPR013210 -
Cone11ag0141 600 PRINTS Leucine-rich repeat signature 100 113 - -
Cone11ag0141 600 PRINTS Leucine-rich repeat signature 122 135 - -
Cone11ag0141 600 ProSiteProfiles Protein kinase domain profile. 300 581 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone11ag0141 600 Gene3D Ribonuclease Inhibitor 26 216 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0573 Cone-Chr10:2673369 Cone11ag0141 Cone-Chr11:632792 4.36E-129 dispersed
Cone11ag0141 Cone-Chr11:632792 Cone16ag0887 Cone-Chr16:9226861 1.78E-239 dispersed
Cone11ag0141 Cone-Chr11:632792 Cone13ag1003 Cone-Chr13:8424072 8.14E-221 wgd
Cone11ag0141 Cone-Chr11:632792 Cone13ag0089 Cone-Chr13:556162 1.08E-55 wgd
Cone11ag0141 Cone-Chr11:632792 Cone18ag1340 Cone-Chr18:9262250 0 wgd
Cone11ag0141 Cone-Chr11:632792 Cone19ag0996 Cone-Chr19:7471069 4.04E-227 wgd
Cone11ag0141 Cone-Chr11:632792 Cone2ag0165 Cone-Chr2:885313 2.71E-249 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81866 PF00270 DEAD 7.20E-48 CL0023 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0141 - - - 0.0