Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0149 ATGGCCGAAATTAAGGTCATAAGATTGATATTCCTTGTTTCTTTTGTTGTGATGTTCAAGAACTTAAATGGTCAGGGTTTGAAAGATGATGATAAGTATTGGCAGAAAAGAGCCGAAGCAGCCGAGAAGGCGGCAATCAGGGACTATCAAGCCGATCCGATGAATGTCACTTACCAATTCAATTTACGTGTTAACAAGGACGTTGATGACACAGAAAAGCTTGGAACCAACAGCACAAGAAGAGGCCTCCGTGGCCGAAAGGCGAAAATCGCAGGGCCATGCAAAGCCACGAACCCAATTGACAGGTGCTGGCGTTGCAACCCTAACTGGGCCAGTAACCGCAAGAAGCTAGCCAAATGCGTGCAAGGTTTTGGCCGCCGAACCCGAGGAGGTCTAAAGGGCCCATTTTACACCGTAGTAGATTCTTCGGATGATGACATAATAAATCCTAAACCGGGGACCCTACGTCACGCAGTCCTTCAGAAGAGACCACTTTGGATCATCTTTGCGCGTAGCATGGTGATTAAATTGAAGTCAGAGCTTATGGTGACTAGCCATAAGACCATTGATGCGCGTGGAGCTAATGTTCACATAGCATACGGGGCGCAGATTACTCTTCAATTCGTGAAGAACGTAATTATCCACGGGCTTCACGTACATCATATTATTTCCCAAAGTGGTGGAATGATTAGAGACTCTTTAGATCACTTTGGTCTCAGACAACGTAGCGACGGAGACGGGATCTCTGTCTTCGGGTCAAGTAGAATTTGGATCGATCATGTCTCATTTTCTAATTGTGAAGATGGATTGCTTGATGTTGTTCAGGGATCCACTGCAATCACCATCTCAAACAACCACTTAACTCATCATAACGATGTAATGCTGCTCGGTGCAAGTGATTCGTTCGCTGGAGACTCCATAATGCAAGTGACGATAGCATTCAACCATTTCGGACAAGGATGCGTGCAAAGGATGCCGGCGTGTAGATGGGGATTTTTCCATGTGGTGAACAATGACTATACACATTGGCTTATGTATGCCATTGGAGGTAGCACACATCCCACCATTATAAGCCAAGGGAACCGATTCATCGCCCCGCCAAATCCTAATGCGAAGCAGGTAACACATAGGGATAACGTGGGTGAGAGTGTGTGGCGGGGTTGGACATGGAGGTCAGAAGGAGATCTGATGATGAATGGAGCCTTCTTCATCGAAGGTGGTAATCCAATGGACAGGCAACGTTACAGTAGACAAGATATGATTAAGGCTAAGCCAGGGACTTATGTCACAAGGCTTACACGTTATGCAGGAGCCCTTGACTGTTTTGTTGGTAAACCTTGTTAA 1344 46.13 MAEIKVIRLIFLVSFVVMFKNLNGQGLKDDDKYWQKRAEAAEKAAIRDYQADPMNVTYQFNLRVNKDVDDTEKLGTNSTRRGLRGRKAKIAGPCKATNPIDRCWRCNPNWASNRKKLAKCVQGFGRRTRGGLKGPFYTVVDSSDDDIINPKPGTLRHAVLQKRPLWIIFARSMVIKLKSELMVTSHKTIDARGANVHIAYGAQITLQFVKNVIIHGLHVHHIISQSGGMIRDSLDHFGLRQRSDGDGISVFGSSRIWIDHVSFSNCEDGLLDVVQGSTAITISNNHLTHHNDVMLLGASDSFAGDSIMQVTIAFNHFGQGCVQRMPACRWGFFHVVNNDYTHWLMYAIGGSTHPTIISQGNRFIAPPNPNAKQVTHRDNVGESVWRGWTWRSEGDLMMNGAFFIEGGNPMDRQRYSRQDMIKAKPGTYVTRLTRYAGALDCFVGKPC 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 699753 701305 + Conep11aG0015200.1 Cone11ag0149 447401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0149 447 PRINTS Pollen allergen Amb family signature 324 343 IPR018082 -
Cone11ag0149 447 PRINTS Pollen allergen Amb family signature 120 137 IPR018082 -
Cone11ag0149 447 PRINTS Pollen allergen Amb family signature 346 365 IPR018082 -
Cone11ag0149 447 PRINTS Pollen allergen Amb family signature 144 169 IPR018082 -
Cone11ag0149 447 PRINTS Pollen allergen Amb family signature 244 265 IPR018082 -
Cone11ag0149 447 PRINTS Pollen allergen Amb family signature 418 441 IPR018082 -
Cone11ag0149 447 PRINTS Pollen allergen Amb family signature 180 196 IPR018082 -
Cone11ag0149 447 PRINTS Pollen allergen Amb family signature 388 412 IPR018082 -
Cone11ag0149 447 SUPERFAMILY Pectin lyase-like 98 438 IPR011050 -
Cone11ag0149 447 PANTHER PECTATE LYASE 18-RELATED 19 444 IPR045032 GO:0030570(InterPro)
Cone11ag0149 447 Gene3D - 97 440 IPR012334 -
Cone11ag0149 447 Pfam Pectate lyase, N terminus 31 83 IPR007524 GO:0030570(InterPro)
Cone11ag0149 447 Pfam Pectate lyase 178 363 IPR002022 -
Cone11ag0149 447 SMART amb_all 172 369 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0149 Cone-Chr11:699753 Cone17ag1110 Cone-Chr17:8246004 1.16E-186 dispersed
Cone11ag0149 Cone-Chr11:699753 Cone18ag1333 Cone-Chr18:9223112 1.93E-301 wgd
Cone11ag0149 Cone-Chr11:699753 Cone2ag0181 Cone-Chr2:945453 1.65E-163 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0149 K01728 - csv:101202789 633.254