Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0188 ATGGATCCTTCTTCTTCTCCTTCTTCTCAGAACTGGCTCGGTTTTTCTCTCTCTAACCAACCCCATCTCTCTCTCTTTCACGCCTTCTCCTCCTCCGCCTCCACTTCTCCAGGGGGTGGTGCACTGCAGGTGGACCCACATGTCGTAAACGAAGACAATGCAAATGCAACCGACCTGTCGATATTCACATCCAGCGGTCCAAAGCTGGAGGACTTTCTGGGTGGCTGCAATAATAATAATATTAACTTCTCTACTCATCCTCATCCTCCTCATCATCCTCATCATCACCATCACCATCACCATCAATCTCAGCCGCCACCGCCTCCGCCGCTCGGTATCTGTGATTCTCATGAACTATATGATTCCGAGCTAAAATCCATAGCCGCCACCTTTCTCCGCGGCTTCAACTCAAACAGTATTGATACTAGTATTAATACTACTCATGAGCACACTGATCATGCTCAAAACCTTGCTATGCAACCGCCATCGCATGTGTTGGTGGGTCTTCCTGATCGTCAGCCTACTCCGCCGTCCAAGAAGACTGTTGATACCTTCGGCCAACGCACCTCCATCTACCGTGGCGTTACCCGGCATAGATGGACAGGAAGATATGAGGCCCATTTGTGGGATAATAGTTGCAGAAGAGAGGGTCAGAGCAGGAAAGGAAGACAAGGTGGTTATGATAAGGAAGAAAAAGCAGCTCGAGCTTATGATCTAGCCGCGCTTAAATACTGGGGCCCGGCCACCACCACGAACTTCTCGGTCTCAAACTATGAGAAGGAACTAGAAGATATGAAGATCATGACTAGACAGGAATTTGTTGCTTCACTTCGAAGGAAAAGTAGTGGTTTTTCTAGAGGAGCTTCCATTTACAGAGGAGTTACAAGGCACCATCAACATGGTAGATGGCAGGCAAGAATAGGAAGAGTGGCTGGCAACAAAGATCTCTACCTAGGCACATTCAGCACTCAAGAAGAGGCAGCGGAAGCTTACGACATTGCCGCTATCAAATTTCGTGGCCTGAATGCTGTAACAAACTTCGACATGAGCCGCTACGATGTCAAGAGCATAGCCAATAGCAACCTGCCAATCGGCGGGATGTCTGGGTCCCACAAGTCGGCGAGAAACTCCTCCGACTCTGATAACAAAAGCTTTGATGGAATTAGCCAACAACAACAACAACGGTCCGACCCGGACCGAGACCATTCCTCATCATCCTCCATAACCTTCACATCAAGTCAATTATTACATCATCAACCTCCCTCGTCAGCATCTGCACTAAGCTTTGCGATTCCTATCAAAGAAGACACAACAAGCAACCTTGATCATCATCAATATTGGTCCCTTCTAGGGTATAATAGTAATAACCCAAACCCGAACAATGGCAAGAACCCTAACCCTAGTTTTGGTGCTCTACCATTTACAATGGACTTTTCATCGGCTAATAATAATTCTTCCTCGTTGAATGAAAGCAATGGTGGGTTGTTAATTAATGGAGGATTTGTTCTTGATCAACATCATGATCAGCAGCAACAAATTGGTGGAAATTCAACGGCAACAACAGTGCTAGCCAACATGAATGGTCATGTTAATAATTCCCATGAAGGGACGTCAACTAGTGCTTCTTCATATGGAAATTGGATTGGAGCGTCATCAGCTCTGCATGGATTCCAAACTCATGCAAAGCCTAATCTGTATCAGACACCAATTTTCGGAATGGAATGA 1725 46.26 MDPSSSPSSQNWLGFSLSNQPHLSLFHAFSSSASTSPGGGALQVDPHVVNEDNANATDLSIFTSSGPKLEDFLGGCNNNNINFSTHPHPPHHPHHHHHHHHQSQPPPPPPLGICDSHELYDSELKSIAATFLRGFNSNSIDTSINTTHEHTDHAQNLAMQPPSHVLVGLPDRQPTPPSKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGPATTTNFSVSNYEKELEDMKIMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSNLPIGGMSGSHKSARNSSDSDNKSFDGISQQQQQRSDPDRDHSSSSSITFTSSQLLHHQPPSSASALSFAIPIKEDTTSNLDHHQYWSLLGYNSNNPNPNNGKNPNPSFGALPFTMDFSSANNNSSSLNESNGGLLINGGFVLDQHHDQQQQIGGNSTATTVLANMNGHVNNSHEGTSTSASSYGNWIGASSALHGFQTHAKPNLYQTPIFGME 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 914968 917841 + Conep11aG0019100.1 Cone11ag0188 447440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0188 574 Pfam AP2 domain 291 340 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag0188 574 Pfam AP2 domain 192 246 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag0188 574 SUPERFAMILY DNA-binding domain 190 256 IPR016177 GO:0003677(InterPro)
Cone11ag0188 574 PRINTS Ethylene responsive element binding protein signature 192 203 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag0188 574 PRINTS Ethylene responsive element binding protein signature 330 350 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag0188 574 CDD AP2 190 256 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag0188 574 ProSiteProfiles AP2/ERF domain profile. 191 254 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag0188 574 MobiDBLite consensus disorder prediction 403 421 - -
Cone11ag0188 574 MobiDBLite consensus disorder prediction 83 112 - -
Cone11ag0188 574 SMART rav1_2 290 354 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag0188 574 SMART rav1_2 191 260 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag0188 574 MobiDBLite consensus disorder prediction 88 103 - -
Cone11ag0188 574 ProSiteProfiles AP2/ERF domain profile. 290 348 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag0188 574 CDD AP2 289 350 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag0188 574 FunFam AP2-like ethylene-responsive transcription factor ANT 190 256 - -
Cone11ag0188 574 MobiDBLite consensus disorder prediction 363 421 - -
Cone11ag0188 574 MobiDBLite consensus disorder prediction 363 394 - -
Cone11ag0188 574 SUPERFAMILY DNA-binding domain 289 350 IPR016177 GO:0003677(InterPro)
Cone11ag0188 574 FunFam AP2-like ethylene-responsive transcription factor 289 350 - -
Cone11ag0188 574 Gene3D AP2/ERF domain 191 256 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag0188 574 Gene3D AP2/ERF domain 290 350 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag0188 574 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 115 435 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0582 Cone-Chr10:2729860 Cone11ag0188 Cone-Chr11:914968 4.60E-112 dispersed
Cone11ag0188 Cone-Chr11:914968 Cone5ag1468 Cone-Chr5:9723706 1.95E-114 dispersed
Cone11ag0188 Cone-Chr11:914968 Cone18ag1297 Cone-Chr18:9057525 2.08E-282 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44288 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0188 K09285 - mdm:103424209 513.072