Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0201 ATGCAAGGCACTGAAACTAAATTAGTCGATCAAGAACCCGGAAAATCCCAGCCCGAGCTAATTATCTCATCATTGAAGTCCAAAAGGGGAAAGAAAACTCCAAAATCTAAATCACGTGCGAAGCCAATTGATCCAACAGTCAAAAAGAGGAGAGTGTCCGAATCCTTGATCAAGAGGGCTAGAAATGATTCTGCCAATAGGAAGAAAAGGGCCGGTGGGAAAATTGTGCTTGGAAAAAATGATCCCAAGTCTGCAAAGAAGTTGTTTTTGAGTCTTCAAAGTAGTAAAGGGAATGGTGAAAATGATGATGGGGAGGAGGTAGATTTGAACAAGGTAAAGAAAAGGAGGGAGAAGAAGAAGAAAAGGAAAAGGGAAAAAGTGGATCTAGATGAAGCCTCTAGATTGAAGAGAAGAACAAGATATCTATTGATTAAAGTTAAGATGGAGCAGAACCTCATTGATGCTTACTCTACCGAAGGTTGGAAAGGCCAAAGCCGAGAAAAGATTAAGCCAGATAAGGAACTAGAAAGAGCACATAAGCAGATATTGAATTGCAAACTTGGAATCAGAGATGCAATTTGCCAGCTTGATTTACTTAGTAAAGTAGGATCCATTGAAGATTCTGTTATCGGTCCAGACGGGTCTGTTTACCACGAACATATTTTCTGTGCAAAATGCAACTTGCGTGAAGCTTTTCTGGATAATGATATCATACTTTGTGATGGAACATGCAACCGTGCTTTCCACCAGAAATGTCTGGACCCGCCTTTAGACACTGAAAACATCCCCCCAGAAGATCAAGGCTGGTTCTGCAAATATTGTGAGTGCAAAATGGAAATACTAGAATTAACCAATGCCCATATTGGCACCTGCTTCTCCCTTGACAGTAGCTGGGAGGATGTTTTCAAGGAGGAAGCTGCTTGCCCGGATGGTGGAAACGAGCTATATAACGAAGAGGAATGGCCGTCTGATGAATCTGGAGATGATGATTATAAACCAGAAAATGGTGAAGAAGGCAACAACGAGGAGAACATTTCGTATAACTCAAGCACTTCTTCTACCAGCTTGAGTTGGTCTTTAGATGGTGAAAGTTGTACTAATGGAGATTCTACTGCATCAACTGAAGCGGATGTTATATCGGGTCGAAGACAGAGACAGGCCGTTGATTATAAGAAGCTATATCATGAAATGTTTGGAAAAGATGTTCCCGCCTTTGAACAAGTTAGTGAAGATGAAGACTGGGGCCCAGGAAAACGGAAGAGGAGAGAGAAGGAATCAGATGCGGCTAGTACTCTCATCACTCTTTATGAGAGTGAGAAAAAGAGTGCTGTTTTTCAACCAGGAGAAAAGGCCGAACTTTATACTGACCCACAAAATAGACGATCCGTCTTTAGACTTCCTTGCAATGCTGTTGAGAAACTTCGCGAAGTGTTTGCTAATAATGAACTTCCCTCTAGGGAAGTCAAATACAATCTCTCTAAAGAATTGGGTCTTGATACTGAGAAGGTTGGCAAATGGTTTAAAAATGCTCGATACTTAGCGCTCAAGTCAAGAAAGCAGGCAGAGGGAACTAAACAACACCATTCATCTCCTCGGACCAATGAAATCAGATCCGAAGATGATGCAATGAAGAATTCTGGGGATCAAACGGAATCGAAGGAAATTGCAGCCTTTACACCTACTGAGTGTAAAAATGTCAACCGGAAAAAACAGTCAAAGGCAACAACAGTCAGCACTTTACAGAAGAACCAGTTCAAAGGATGTAGTGACAAGGATATTACAGAGGTTGAAGATGACGTGAGCTTGAAAGGGCTTGTCAAGGCAAGAACAATGGAGAAGAAGAGACGCGGTTTCAAAGACACAAGCAGGTTTGAAGAAGCGGAAGAGATGATGGAGAGGCTTTGTACAGTTAAGTGTAGATTAGAAAACATGCAGCAGTCATTAGCCAGATTTTACGCAAACAAAAAAGCTAATAAGAGGAAAAAGAAGAGGAAGAAGAGTTCAGACAAATCACATTTGTTCGATATAATGTATGTTCCTCGGGCTGTCTTGAAGGAAAAGGTTTGA 2067 41.36 MQGTETKLVDQEPGKSQPELIISSLKSKRGKKTPKSKSRAKPIDPTVKKRRVSESLIKRARNDSANRKKRAGGKIVLGKNDPKSAKKLFLSLQSSKGNGENDDGEEVDLNKVKKRREKKKKRKREKVDLDEASRLKRRTRYLLIKVKMEQNLIDAYSTEGWKGQSREKIKPDKELERAHKQILNCKLGIRDAICQLDLLSKVGSIEDSVIGPDGSVYHEHIFCAKCNLREAFLDNDIILCDGTCNRAFHQKCLDPPLDTENIPPEDQGWFCKYCECKMEILELTNAHIGTCFSLDSSWEDVFKEEAACPDGGNELYNEEEWPSDESGDDDYKPENGEEGNNEENISYNSSTSSTSLSWSLDGESCTNGDSTASTEADVISGRRQRQAVDYKKLYHEMFGKDVPAFEQVSEDEDWGPGKRKRREKESDAASTLITLYESEKKSAVFQPGEKAELYTDPQNRRSVFRLPCNAVEKLREVFANNELPSREVKYNLSKELGLDTEKVGKWFKNARYLALKSRKQAEGTKQHHSSPRTNEIRSEDDAMKNSGDQTESKEIAAFTPTECKNVNRKKQSKATTVSTLQKNQFKGCSDKDITEVEDDVSLKGLVKARTMEKKRRGFKDTSRFEEAEEMMERLCTVKCRLENMQQSLARFYANKKANKRKKKRKKSSDKSHLFDIMYVPRAVLKEKV 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1004832 1008554 - Conep11aG0020800.1 Cone11ag0201 447453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0201 688 CDD homeodomain 460 520 IPR001356 GO:0003677(InterPro)
Cone11ag0201 688 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 31 686 - GO:0003677(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0006325(PANTHER)|GO:0006355(PANTHER)
Cone11ag0201 688 FunFam pathogenesis-related homeodomain protein-like 214 274 - -
Cone11ag0201 688 MobiDBLite consensus disorder prediction 99 113 - -
Cone11ag0201 688 Pfam PHD-finger 223 274 IPR019787 -
Cone11ag0201 688 Pfam Homeodomain 470 512 IPR001356 GO:0003677(InterPro)
Cone11ag0201 688 MobiDBLite consensus disorder prediction 518 555 - -
Cone11ag0201 688 SUPERFAMILY Homeodomain-like 458 522 IPR009057 -
Cone11ag0201 688 ProSiteProfiles Zinc finger PHD-type profile. 220 277 IPR019787 -
Cone11ag0201 688 SUPERFAMILY FYVE/PHD zinc finger 213 280 IPR011011 -
Cone11ag0201 688 Gene3D - 459 526 - -
Cone11ag0201 688 SMART PHD_3 222 275 IPR001965 -
Cone11ag0201 688 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 214 271 IPR013083 -
Cone11ag0201 688 MobiDBLite consensus disorder prediction 340 378 - -
Cone11ag0201 688 ProSitePatterns Zinc finger PHD-type signature. 223 274 IPR019786 -
Cone11ag0201 688 MobiDBLite consensus disorder prediction 1 80 - -
Cone11ag0201 688 FunFam pathogenesis-related homeodomain protein 459 523 - -
Cone11ag0201 688 CDD PHD_PRHA_like 222 274 IPR045876 -
Cone11ag0201 688 SMART HOX_1 459 521 IPR001356 GO:0003677(InterPro)
Cone11ag0201 688 MobiDBLite consensus disorder prediction 518 548 - -
Cone11ag0201 688 MobiDBLite consensus disorder prediction 317 332 - -
Cone11ag0201 688 MobiDBLite consensus disorder prediction 309 378 - -
Cone11ag0201 688 MobiDBLite consensus disorder prediction 37 76 - -
Cone11ag0201 688 MobiDBLite consensus disorder prediction 1 23 - -
Cone11ag0201 688 MobiDBLite consensus disorder prediction 93 127 - -
Cone11ag0201 688 ProSiteProfiles 'Homeobox' domain profile. 457 517 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1026 Cone-Chr10:7151963 Cone11ag0201 Cone-Chr11:1004832 2.18E-50 dispersed
Cone11ag0201 Cone-Chr11:1004832 Cone3ag1009 Cone-Chr3:28893546 3.80E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44289 PF05761 5_nucleotid 3.80E-21 CL0137 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0201 - - - 0.0