Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0216 ATGATGGTTGATCAGACGGCGGCGATACAAGAAGCAGCCTATGACGGCCTGAAGAGCATGGAGCACCTGATCCAAATATTGTCCCATCAACCGCCACCCCAGAGCTGCCGTCTTAACCTCCGCCCGGAATTCACGGAAGTATCTGACGTCACAGTCGCCAAGTTTAAACAAGTCATCTCGCTCTTAAACCGGACCGGCCACGCCCGGTTCCGTCGCGGACCCAAAAACACACCACCACCGTTTGATTCTTATTCTGGCCAACCCGACCCAGTTCACAACCTTCCTCGTCTTAACTCGGCCGGTTGGACTAAATCTTATCCTGATCATCAACCCAGTCTGAATACAACTAAATCGTTGAAACGAAAGGCGTCTACTGAGTCAGAGACCGAGTTGTTGTCTATGACTCAGTACACAAAGGAGTCGGTAATTATCACCACTTCAGCAGCTCAGAATTCTTTCTCTACGTCGTCGTTTTTTTCCTCGATTACTGGAGACAGCAGCGTTTCCAACGGAAAACTAGGTCCGTCTCTATTTGTAGCACCGACGACAACCTTCTCCTCCGGTAAACCGCCTATATCGTCGAATAACCGGAAAAAGTGCCAAGACCACGCTGTCTCCGGTAAAACTTCCTCCTCCGGCCGCTGCCACTGCTCCAAGAGAAGGAAATTGAGGACGAAGAGGAGCATACGAGTGCCGGCGATTAGTTCGAAGACCGCCGATATACCCGCCGATGAATACTCGTGGAGAAAGTACGGCCAAAAGCCGATCAAGGGTTCACCTTACCCACGTGGGTACTACAGGTGCAGTTGCGTTAGAGGGTGTCCAGCAAGGAAACACGTGGAAAGGGCCCGAGATGAGCCCACGATGCTCATCGTGACTTACGAGGGAGAGCACCGTCACGGCGGCCCACAAGCGGCGGCGGCGGCAGCCCAGCCGGAGTTAGCTGCCGCCAATGGGTTTCTCTTACACAAGAGTTAA 978 52.86 MMVDQTAAIQEAAYDGLKSMEHLIQILSHQPPPQSCRLNLRPEFTEVSDVTVAKFKQVISLLNRTGHARFRRGPKNTPPPFDSYSGQPDPVHNLPRLNSAGWTKSYPDHQPSLNTTKSLKRKASTESETELLSMTQYTKESVIITTSAAQNSFSTSSFFSSITGDSSVSNGKLGPSLFVAPTTTFSSGKPPISSNNRKKCQDHAVSGKTSSSGRCHCSKRRKLRTKRSIRVPAISSKTADIPADEYSWRKYGQKPIKGSPYPRGYYRCSCVRGCPARKHVERARDEPTMLIVTYEGEHRHGGPQAAAAAAQPELAAANGFLLHKS 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1074395 1075841 + Conep11aG0022300.1 Cone11ag0216 447468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0216 325 MobiDBLite consensus disorder prediction 185 213 - -
Cone11ag0216 325 SUPERFAMILY WRKY DNA-binding domain 238 303 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone11ag0216 325 ProSiteProfiles WRKY domain profile. 237 303 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone11ag0216 325 MobiDBLite consensus disorder prediction 69 127 - -
Cone11ag0216 325 MobiDBLite consensus disorder prediction 98 120 - -
Cone11ag0216 325 Pfam Plant zinc cluster domain 197 240 IPR018872 -
Cone11ag0216 325 MobiDBLite consensus disorder prediction 185 215 - -
Cone11ag0216 325 FunFam WRKY transcription factor 65 226 303 - -
Cone11ag0216 325 Pfam WRKY DNA -binding domain 244 300 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone11ag0216 325 Gene3D WRKY domain 227 304 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone11ag0216 325 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 8 304 IPR044810 GO:0003700(InterPro)
Cone11ag0216 325 SMART WRKY_cls 242 302 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0216 Cone-Chr11:1074395 Cone7ag1766 Cone-Chr7:11645922 2.40E-83 dispersed
Cone2ag0664 Cone-Chr2:31696250 Cone11ag0216 Cone-Chr11:1074395 2.14E-67 transposed
Cone11ag0216 Cone-Chr11:1074395 Cone18ag1268 Cone-Chr18:8911535 3.03E-194 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44290 PF13639 zf-RING_2 6.20E-13 CL0229 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0216 - - - 0.0