Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone11ag0216 | ATGATGGTTGATCAGACGGCGGCGATACAAGAAGCAGCCTATGACGGCCTGAAGAGCATGGAGCACCTGATCCAAATATTGTCCCATCAACCGCCACCCCAGAGCTGCCGTCTTAACCTCCGCCCGGAATTCACGGAAGTATCTGACGTCACAGTCGCCAAGTTTAAACAAGTCATCTCGCTCTTAAACCGGACCGGCCACGCCCGGTTCCGTCGCGGACCCAAAAACACACCACCACCGTTTGATTCTTATTCTGGCCAACCCGACCCAGTTCACAACCTTCCTCGTCTTAACTCGGCCGGTTGGACTAAATCTTATCCTGATCATCAACCCAGTCTGAATACAACTAAATCGTTGAAACGAAAGGCGTCTACTGAGTCAGAGACCGAGTTGTTGTCTATGACTCAGTACACAAAGGAGTCGGTAATTATCACCACTTCAGCAGCTCAGAATTCTTTCTCTACGTCGTCGTTTTTTTCCTCGATTACTGGAGACAGCAGCGTTTCCAACGGAAAACTAGGTCCGTCTCTATTTGTAGCACCGACGACAACCTTCTCCTCCGGTAAACCGCCTATATCGTCGAATAACCGGAAAAAGTGCCAAGACCACGCTGTCTCCGGTAAAACTTCCTCCTCCGGCCGCTGCCACTGCTCCAAGAGAAGGAAATTGAGGACGAAGAGGAGCATACGAGTGCCGGCGATTAGTTCGAAGACCGCCGATATACCCGCCGATGAATACTCGTGGAGAAAGTACGGCCAAAAGCCGATCAAGGGTTCACCTTACCCACGTGGGTACTACAGGTGCAGTTGCGTTAGAGGGTGTCCAGCAAGGAAACACGTGGAAAGGGCCCGAGATGAGCCCACGATGCTCATCGTGACTTACGAGGGAGAGCACCGTCACGGCGGCCCACAAGCGGCGGCGGCGGCAGCCCAGCCGGAGTTAGCTGCCGCCAATGGGTTTCTCTTACACAAGAGTTAA | 978 | 52.86 | MMVDQTAAIQEAAYDGLKSMEHLIQILSHQPPPQSCRLNLRPEFTEVSDVTVAKFKQVISLLNRTGHARFRRGPKNTPPPFDSYSGQPDPVHNLPRLNSAGWTKSYPDHQPSLNTTKSLKRKASTESETELLSMTQYTKESVIITTSAAQNSFSTSSFFSSITGDSSVSNGKLGPSLFVAPTTTFSSGKPPISSNNRKKCQDHAVSGKTSSSGRCHCSKRRKLRTKRSIRVPAISSKTADIPADEYSWRKYGQKPIKGSPYPRGYYRCSCVRGCPARKHVERARDEPTMLIVTYEGEHRHGGPQAAAAAAQPELAAANGFLLHKS | 325 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1074395 | 1075841 | + | Conep11aG0022300.1 | Cone11ag0216 | 447468 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone11ag0216 | 325 | MobiDBLite | consensus disorder prediction | 185 | 213 | - | - | |
Cone11ag0216 | 325 | SUPERFAMILY | WRKY DNA-binding domain | 238 | 303 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone11ag0216 | 325 | ProSiteProfiles | WRKY domain profile. | 237 | 303 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone11ag0216 | 325 | MobiDBLite | consensus disorder prediction | 69 | 127 | - | - | |
Cone11ag0216 | 325 | MobiDBLite | consensus disorder prediction | 98 | 120 | - | - | |
Cone11ag0216 | 325 | Pfam | Plant zinc cluster domain | 197 | 240 | IPR018872 | - | |
Cone11ag0216 | 325 | MobiDBLite | consensus disorder prediction | 185 | 215 | - | - | |
Cone11ag0216 | 325 | FunFam | WRKY transcription factor 65 | 226 | 303 | - | - | |
Cone11ag0216 | 325 | Pfam | WRKY DNA -binding domain | 244 | 300 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone11ag0216 | 325 | Gene3D | WRKY domain | 227 | 304 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone11ag0216 | 325 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 8 | 304 | IPR044810 | GO:0003700(InterPro) | |
Cone11ag0216 | 325 | SMART | WRKY_cls | 242 | 302 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone11ag0216 | Cone-Chr11:1074395 | Cone7ag1766 | Cone-Chr7:11645922 | 2.40E-83 | dispersed | |
Cone2ag0664 | Cone-Chr2:31696250 | Cone11ag0216 | Cone-Chr11:1074395 | 2.14E-67 | transposed | |
Cone11ag0216 | Cone-Chr11:1074395 | Cone18ag1268 | Cone-Chr18:8911535 | 3.03E-194 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44290 | PF13639 | zf-RING_2 | 6.20E-13 | CL0229 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone11ag0216 | - | - | - | 0.0 |