Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag0242 ATGGTTGTCACCAAGATCGAATCGTTGGAATCCGATGCATCCCTTCACTCGACTTTCGCATCTCGATATGTTAGAACGTGTCTTCCCAGGTTCAAACTGCCGGATAATTCGATCCCGAAAGAGGCGGCATACCAGATCATTAACGACGAGCTGATGCTGGACGGGAATCCACGGCTCAACTTGGCGTCGTTCGTGACTACGTGGATGGAACCGGAATGTGATAAGCTCATCATGGCATCTGTTAACAAGAACTATGTCGACATGGATGAGTATCCTGTCACCACTGAATTACAGAATCGGTGTGTGAACATGATAGCACATCTATTCAATGCCCCACTAGGAGAGTCCGAGTCAGCGGTTGGAGTGGGGACGGTGGGGTCCTCCGAGGCTATCATGTTGGCTGGCTTAGCTTTCAAGCGCAAGTGGCAGAACAAGAGGCGGGCCCAGGGAAAGCCCGTCGACAAGCCCAACATTGTCACCGGAGCAAACGTTCAGGTATGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAACTAAAGGAAGTAAAGCTAAGGGATGGATACTATGTCATGGACCCCCAAAAGGCAGTAGACTTGGTTGATGAGAACACTATTTGTGTAGCTGCTATTCTTGGTTCCACTCTTAACGGAGAATTCGAAGATGTCAAACTCCTCAACGATCTATTGCTCGAGAAGAACCGTCAAACCGGATGGGAGACTCCTATTCATGTTGATGCAGCAAGTGGTGGGTTCATTGCTCCATTTCTTTACCCAGAACTGGAGTGGGATTTCCGTTTGCCACTTGTGAAGAGTATTAACGTCAGTGGGCACAAGTATGGGCTTGTCTATGCTGGCATTGGTTGGGTCATCTGGAGGCAAAAGGAAGACTTGCCAGAAGAACTAATCTTCCATATCAACTATCTTGGAGCTGATCAACCCACCTTCACTCTCAACTTCTCCAAAGGTTCAAGCCAAGTCATTGCTCAATACTACCAGCTCATCCGCTTAGGCTATGAAGGCTACAAGAATGTGATGGAGAATTGCCGGGAAAACATGATAGTACTAAAAGAAGGGTTGGAAAAGACAGAGCGCTTCAACGTAATCTCCAAGGACATTGGAGTGCCCTTAGTGGCATTCTCCTTACAAGACAATAGCCGTCACAACGAGTTTGAAATATCGGACCTTCTAAGACGGTTTGGTTGGATCGTCCCGGCTTATACAATGCCTCCGGATGCTCAGCACGTAACAGTTTTGCGTGTCGTGATCCGGGAAGATTTTTCTAGAACTCTTGCGGATCGTCTGGTGAACGACATTCAAAAGGTTTTGCATGAGATTGATTGCCTTCCGGCTAGGATTAGTACTAAGGTAGCAGATAATGGTAAGACCCTTCAAGTTGTTTCGAGGAGTGGGATGACGGAGGATGAGATGCAGAAGACAAGGGAAATCACTACGATTTGGAAAAAGTTTGTCATGGAGAGGAAGAAGATGAATGGTGTTTGCTAG 1503 47.17 MVVTKIESLESDASLHSTFASRYVRTCLPRFKLPDNSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGESESAVGVGTVGSSEAIMLAGLAFKRKWQNKRRAQGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLRDGYYVMDPQKAVDLVDENTICVAAILGSTLNGEFEDVKLLNDLLLEKNRQTGWETPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRQKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYKNVMENCRENMIVLKEGLEKTERFNVISKDIGVPLVAFSLQDNSRHNEFEISDLLRRFGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLADRLVNDIQKVLHEIDCLPARISTKVADNGKTLQVVSRSGMTEDEMQKTREITTIWKKFVMERKKMNGVC 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1162359 1165456 + Conep11aG0024900.1 Cone11ag0242 447494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag0242 500 Pfam Pyridoxal-dependent decarboxylase conserved domain 34 381 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Cone11ag0242 500 PANTHER GLUTAMATE DECARBOXYLASE 1 500 IPR010107 GO:0004351(PANTHER)|GO:0004351(InterPro)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Cone11ag0242 500 SUPERFAMILY PLP-dependent transferases 16 445 IPR015424 -
Cone11ag0242 500 FunFam Glutamate decarboxylase 67 361 - -
Cone11ag0242 500 FunFam Glutamate decarboxylase 362 449 - -
Cone11ag0242 500 Gene3D - 1 66 - -
Cone11ag0242 500 Gene3D - 67 361 IPR015421 -
Cone11ag0242 500 Gene3D - 362 449 - -
Cone11ag0242 500 CDD DOPA_deC_like 60 440 - -
Cone11ag0242 500 FunFam Glutamate decarboxylase 1 66 - -
Cone11ag0242 500 NCBIfam glutamate decarboxylase 17 445 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0242 Cone-Chr11:1162359 Cone19ag0368 Cone-Chr19:3118052 3.08E-289 dispersed
Cone11ag0242 Cone-Chr11:1162359 Cone18ag1245 Cone-Chr18:8815301 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag0242 K01580 - csv:101216119 876.7